PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g17961.1.p
Common NameBRADI_1g17961, LOC100837018
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 220aa    MW: 24187.9 Da    PI: 6.6742
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g17961.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.4e-1872121356
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                       y+G+r+++ +g+W+AeIrdp   gk +r++lg+f  ae Aa+a+++a+++++g+
  Bradi1g17961.1.p  72 YRGIRRRP-WGKWAAEIRDP---GKGARVWLGTFADAEAAARAYDRAARRIRGA 121
                       9*******.**********8...545*************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.7E-1171120IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-3071129IPR001471AP2/ERF domain
PROSITE profilePS5103223.85471128IPR001471AP2/ERF domain
SMARTSM003809.6E-3571134IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-2171129IPR016177DNA-binding domain
CDDcd000183.56E-1572129No hitNo description
PRINTSPR003672.2E-137283IPR001471AP2/ERF domain
PRINTSPR003672.2E-13110130IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 220 aa     Download sequence    Send to blast
MCGGAIIPDC IPEHDHHRTA DFWPLASDAG HELYPAGLSL TGACKFPHYQ EPAEPSRRRE  60
GSNNKRERKT AYRGIRRRPW GKWAAEIRDP GKGARVWLGT FADAEAAARA YDRAARRIRG  120
AKAKVNFPNE DPPPGDEVPV HRGTAMAPLP WYYDDGDGVS GLCRHPYDVA GNDVVTADEG  180
PAAAAAYVHH QMPPQHQQQQ EAGLELWSFD DNINMAVSM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-2172128663ATERF1
3gcc_A7e-2172128663ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16478KRERKTAYRGIRRRP
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g17961.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9768702e-59EU976870.1 Zea mays clone 992413 mRNA sequence.
GenBankKJ7283482e-59KJ728348.1 Zea mays clone pUT6630 AP2-EREBP transcription factor (EREB200) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559809.11e-162ethylene-responsive transcription factor RAP2-3
SwissprotO222592e-33ERF71_ARATH; Ethylene-responsive transcription factor ERF071
TrEMBLA0A0Q3NCI01e-161A0A0Q3NCI0_BRADI; Uncharacterized protein
STRINGORGLA07G0205000.14e-53(Oryza glaberrima)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP115852836
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.13e-23ERF family protein
Publications ? help Back to Top
  1. Gasch P, et al.
    Redundant ERF-VII Transcription Factors Bind to an Evolutionarily Conserved cis-Motif to Regulate Hypoxia-Responsive Gene Expression in Arabidopsis.
    Plant Cell, 2016. 28(1): p. 160-80
    [PMID:26668304]
  2. Yao Y,Chen X,Wu AM
    ERF-VII members exhibit synergistic and separate roles in Arabidopsis.
    Plant Signal Behav, 2017. 12(6): p. e1329073
    [PMID:28537474]
  3. Eysholdt-Derzsó E,Sauter M
    Root Bending Is Antagonistically Affected by Hypoxia and ERF-Mediated Transcription via Auxin Signaling.
    Plant Physiol., 2017. 175(1): p. 412-423
    [PMID:28698356]
  4. Eysholdt-Derzsó E,Sauter M
    Hypoxia and the group VII ethylene response transcription factor HRE2 promote adventitious root elongation in Arabidopsis.
    Plant Biol (Stuttg), 2019. 21 Suppl 1: p. 103-108
    [PMID:29996004]