PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g17660.1.p | ||||||||
Common Name | BRADI_1g17660 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | WRKY | ||||||||
Protein Properties | Length: 328aa MW: 33998.7 Da PI: 7.9271 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 77.2 | 1.9e-24 | 128 | 188 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +Dg +WrKYGqK +++s++prsYYrCt++ gC+++k+v++s+++p+ ++i Y geH+++ Bradi1g17660.1.p 128 EDGQSWRKYGQKFIHKSTNPRSYYRCTHKhdqGCKATKQVQKSESNPSEFVISYFGEHTCK 188 79**************************99999**************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 5.0E-26 | 113 | 190 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 5.75E-24 | 122 | 190 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.033 | 122 | 190 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.1E-35 | 127 | 189 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.3E-23 | 128 | 188 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MTSHNGGRSS EPPPPQAALY DDLVGVRERA VMLQTVLQGS PVGDAGELMQ GMMTRLSSAF 60 SRLGANGGGV VAASGAGSAA ATASGAGRRP GGRRTRAGAA AGPVRRSSGS RRRSKSPFIK 120 TETVTTPEDG QSWRKYGQKF IHKSTNPRSY YRCTHKHDQG CKATKQVQKS ESNPSEFVIS 180 YFGEHTCKDP STLHLEGAAA PPDHCANLID FSSINNGTAA TASTSAFPHS MLFPGISYSS 240 LPAQGLPAFC EKLTQAAADQ VAAEEGQRMA ATVPLTVGSA PAEYWPAPGE VDAVDAGISS 300 FPSSPSSLGF TGSFGSFGDD DLFGFDS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 1e-22 | 124 | 188 | 5 | 69 | OsWRKY45 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g17660.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003559789.1 | 0.0 | probable WRKY transcription factor 29 | ||||
TrEMBL | I1GR43 | 0.0 | I1GR43_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G17660.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12527 | 28 | 37 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46400.1 | 2e-23 | WRKY DNA-binding protein 46 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g17660.1.p |