PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g17524.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 584aa    MW: 68532 Da    PI: 8.7918
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g17524.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR139.71.6e-1231110190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                       +fYn Y+ e+GF vr +k + + + +   +++  C + gk+ +e++k         + r+gC a +++ +++d  w++ + ++ HnH+l+
  Bradi1g17524.1.p  31 NFYNLYSWEIGFGVRYAKCRLNVHRQ-KCMQEIACGCAGKPVKENTK---------TIRCGCPALIRLLRSEDRGWYICEHRESHNHPLS 110
                       6*****************99995555.678899******99887655.........99******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.5E-931110IPR004330FAR1 DNA binding domain
PfamPF105512.8E-27215310IPR018289MULE transposase domain
PROSITE profilePS509668.951478514IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 584 aa     Download sequence    Send to blast
MPVRCLSRHR YQFVVYPGIG TKFASLDDAY NFYNLYSWEI GFGVRYAKCR LNVHRQKCMQ  60
EIACGCAGKP VKENTKTIRC GCPALIRLLR SEDRGWYICE HRESHNHPLS NTCGEKMHWQ  120
SHRHIDQYTK ELVKQLQENN VSLGKVYSII GSFFGSSDQI PFTKRSLRTL CGKISQEQSD  180
NDAMKTMDVD DDSMMKTLMW TSGRSMDQYI CFGDILTFDT TYRTNLYDMP FGLFVGVNNH  240
FQSIIMGGML MRDEKVESFK WVFAEFMRLI GGKDRHPKTI LTDQVRSMEL AIAEILPNTK  300
HRWCKWHVLK KAKESLGALY GKRSEFRSDF HRVVDMMCSE EEFETSWAEM VAKHGLQKQP  360
YLTQIYEGRA KWAKPYFRDV FCCPMHLFVK QYEKLQFDRA SEESYQEKRT SLSGVVLRAN  420
LPIERHASKV YTRAMFDQFG LALFDSGNYM LEELEQRRLY VVRHMHHEVR DRWCKSVYSV  480
QVDLRNERLN CECCFSQHAG MPCCHQLKVP AYLVMKRWTR DARDMLPPHL KMYQRDQARP  540
RAVTYRHSNL SLTALEIVKM ADSNVDAYEL AMSEMVKVRA KLEP
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g17524.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020197126.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2K2DJU30.0A0A2K2DJU3_BRADI; Uncharacterized protein (Fragment)
STRINGEMT285400.0(Aegilops tauschii)
STRINGPavir.J04547.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1832967
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.18e-66FAR1-related sequence 5