PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g17480.1.p | ||||||||
Common Name | BRADI_1g17480, LOC100826391 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | NAC | ||||||||
Protein Properties | Length: 376aa MW: 40073.9 Da PI: 6.6435 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.9 | 1.6e-52 | 8 | 136 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdeel+ +yL++++++ ++++ +i++vdiyk++PwdLp ++ +e+ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk+++ Bradi1g17480.1.p 8 LPPGFRFHPTDEELILHYLRNRAASAPCPV-PIIADVDIYKFDPWDLPCQAVYGEQEWYFFSPRDRKYPNGIRPNRAAGSGYWKATGTDKPIH 99 79****************************.88***************65556799************************************* PP NAM 94 sk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 + +ge vg+kk Lvfykgr pkg+kt+W+mheyrl Bradi1g17480.1.p 100 DPatGGEPVGVKKALVFYKGRPPKGSKTSWIMHEYRL 136 99889999***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.57E-63 | 4 | 178 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 60.233 | 8 | 178 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.5E-27 | 9 | 136 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009825 | Biological Process | multidimensional cell growth | ||||
GO:0009835 | Biological Process | fruit ripening | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0010150 | Biological Process | leaf senescence | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 376 aa Download sequence Send to blast |
MSTTAAALPP GFRFHPTDEE LILHYLRNRA ASAPCPVPII ADVDIYKFDP WDLPCQAVYG 60 EQEWYFFSPR DRKYPNGIRP NRAAGSGYWK ATGTDKPIHD PATGGEPVGV KKALVFYKGR 120 PPKGSKTSWI MHEYRLSGAD PLSSSANTNG AGNAYKPIKF RNVSMRLDDW VLCRIYKKSG 180 LQASPMVPPL ADYDHMDHTH SSGNNNNDDD GLSSFSGSGG GAGGGFVVDA DAACSSFLYA 240 PSGNTTCRTI MAPRLPAIPS MSELFDDYAL AQLFDATAAA PEEHHPAVHP SLNQLLSVGD 300 GPHAEYYSSS PSPAVTAGKR KAEDQRAPAA KRLVNGMSCF AVDDVAPQSA AAAESGLQAA 360 VLGAGLSSHQ MLPQF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-69 | 4 | 179 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-69 | 4 | 179 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-69 | 4 | 179 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-69 | 4 | 179 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-69 | 4 | 179 | 16 | 169 | NAC domain-containing protein 19 |
3swm_B | 4e-69 | 4 | 179 | 16 | 169 | NAC domain-containing protein 19 |
3swm_C | 4e-69 | 4 | 179 | 16 | 169 | NAC domain-containing protein 19 |
3swm_D | 4e-69 | 4 | 179 | 16 | 169 | NAC domain-containing protein 19 |
3swp_A | 4e-69 | 4 | 179 | 16 | 169 | NAC domain-containing protein 19 |
3swp_B | 4e-69 | 4 | 179 | 16 | 169 | NAC domain-containing protein 19 |
3swp_C | 4e-69 | 4 | 179 | 16 | 169 | NAC domain-containing protein 19 |
3swp_D | 4e-69 | 4 | 179 | 16 | 169 | NAC domain-containing protein 19 |
4dul_A | 3e-69 | 4 | 179 | 13 | 166 | NAC domain-containing protein 19 |
4dul_B | 3e-69 | 4 | 179 | 13 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00221 | DAP | Transfer from AT1G69490 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g17480.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT067914 | 1e-110 | BT067914.2 Zea mays full-length cDNA clone ZM_BFc0188L19 mRNA, complete cds. | |||
GenBank | EU971399 | 1e-110 | EU971399.1 Zea mays clone 363807 NAC domain transcription factor mRNA, complete cds. | |||
GenBank | KP297932 | 1e-110 | KP297932.1 Zea mays Zma1158 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003559782.1 | 0.0 | NAC domain-containing protein 18 | ||||
TrEMBL | I1GR23 | 0.0 | I1GR23_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G17480.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1237 | 36 | 123 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69490.1 | 4e-83 | NAC-like, activated by AP3/PI |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g17480.1.p |
Entrez Gene | 100826391 |