PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g17440.1.p | ||||||||
Common Name | BRADI_1g17440, LOC100825768 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | NAC | ||||||||
Protein Properties | Length: 303aa MW: 33451.9 Da PI: 5.2444 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169 | 1.5e-52 | 28 | 157 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtdee+v++yL++k+ + ++ + vi++v+++++ePw+Lp k+k +ekew+fF+++d+ky+tg+r+nratksgyWkatg+d+e++ Bradi1g17440.1.p 28 LPPGFRFHPTDEEVVTHYLTPKALDGRFAC-VVIADVNLNRCEPWELPGKAKMGEKEWFFFVHKDRKYPTGSRTNRATKSGYWKATGRDREIF 119 79*************************999.78***************99999**************************************** PP NAM 94 sk...kgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++ lvglkktLvfy grap+g+kt+Wvmhe+rl Bradi1g17440.1.p 120 RGrggSEVLVGLKKTLVFYLGRAPHGTKTQWVMHEFRL 157 986655566***************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.35E-61 | 24 | 181 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.902 | 28 | 181 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.4E-27 | 29 | 157 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MSDVTAVMDL GEAAAPAVPR RRQQQLDLPP GFRFHPTDEE VVTHYLTPKA LDGRFACVVI 60 ADVNLNRCEP WELPGKAKMG EKEWFFFVHK DRKYPTGSRT NRATKSGYWK ATGRDREIFR 120 GRGGSEVLVG LKKTLVFYLG RAPHGTKTQW VMHEFRLDGQ LPANLPPSAK DEWAVCRVFS 180 KDMAAAAAAK AEPPQMEAAP AAPAMAMERS DSITDFLDGF LLDQLPPLMD LPLATGPMED 240 DGASFEVKAE QQENPSYFSL PATSTRVGGQ AADSMASSSK LYLGLDDLDP LMDYSNNDFW 300 KF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 1e-52 | 25 | 185 | 17 | 172 | NAC domain-containing protein 19 |
3swm_B | 1e-52 | 25 | 185 | 17 | 172 | NAC domain-containing protein 19 |
3swm_C | 1e-52 | 25 | 185 | 17 | 172 | NAC domain-containing protein 19 |
3swm_D | 1e-52 | 25 | 185 | 17 | 172 | NAC domain-containing protein 19 |
3swp_A | 1e-52 | 25 | 185 | 17 | 172 | NAC domain-containing protein 19 |
3swp_B | 1e-52 | 25 | 185 | 17 | 172 | NAC domain-containing protein 19 |
3swp_C | 1e-52 | 25 | 185 | 17 | 172 | NAC domain-containing protein 19 |
3swp_D | 1e-52 | 25 | 185 | 17 | 172 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269|PubMed:27021284}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g17440.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003559780.1 | 0.0 | NAC domain-containing protein 92 | ||||
Swissprot | Q9FK44 | 1e-78 | NAC87_ARATH; NAC domain-containing protein 87 | ||||
TrEMBL | I1GR19 | 0.0 | I1GR19_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G17440.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1862 | 38 | 104 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18270.2 | 8e-78 | Arabidopsis NAC domain containing protein 87 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g17440.1.p |
Entrez Gene | 100825768 |
Publications ? help Back to Top | |||
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