PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g17400.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family G2-like
Protein Properties Length: 322aa    MW: 35131.4 Da    PI: 8.1942
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g17400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like1062.2e-3347101155
           G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                       kprl+Wt+eLHerFveav+qLGG++kAtPkti+++m+++gLtl+h+kSHLQk+Rl
  Bradi1g17400.1.p  47 KPRLKWTSELHERFVEAVNQLGGPDKATPKTIMRVMGIPGLTLYHLKSHLQKFRL 101
                       79****************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.08444104IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.1E-3145101IPR009057Homeodomain-like
SuperFamilySSF466895.91E-1746101IPR009057Homeodomain-like
TIGRFAMsTIGR015574.3E-2447102IPR006447Myb domain, plants
PfamPF002498.6E-94999IPR001005SANT/Myb domain
PfamPF143796.6E-24148194IPR025756MYB-CC type transcription factor, LHEQLE-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MYHQQQHQLH THSQHLSSRP SLSPEKKFLR QGQGRGDSGL ILSTDAKPRL KWTSELHERF  60
VEAVNQLGGP DKATPKTIMR VMGIPGLTLY HLKSHLQKFR LGKNLQTQAA VVNVKNVLGF  120
VTATDKACEG HGSPADHLNR ETGTSKSMHI SETLQMQIEV QRRLHEQIEV QRHLQLRIEA  180
QGKYLHSVLE KAQEALAKNQ HAAGAGAGHE AGKPPARQRL QRNDGSADGS CLTAASDEGI  240
LSIGLSSAAA AGARRAAVPP LETPARSSSG RDRGPEEEGE EEEEECFLFL GKPEHHEERI  300
KLGLSIGGGE RIDLNGSSWK D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4r_A1e-1947103157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B1e-1947103157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C1e-1947103157Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D1e-1947103157Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may act on the GAL1 promoter (PubMed:12008900). Acts redundantly with MYR2 as a repressor of flowering and organ elongation under decreased light intensity (PubMed:21255164). Represses gibberellic acid (GA)-dependent responses and affects levels of bioactive GA (PubMed:21255164). {ECO:0000269|PubMed:21255164, ECO:0000305|PubMed:12008900}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g17400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010233783.10.0myb-related protein 2
SwissprotQ9FK471e-72PHLA_ARATH; Myb-related protein 1
TrEMBLA0A0Q3KTX30.0A0A0Q3KTX3_BRADI; Uncharacterized protein
STRINGBRADI1G17400.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP35743879
Representative plantOGRP7817262
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G18240.44e-70myb-related protein 1
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]