PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g17335.1.p
Common NameBRADI_1g17335, LOC100822382
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bZIP
Protein Properties Length: 276aa    MW: 29576.5 Da    PI: 10.0657
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g17335.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_153.74.7e-17166217557
                       CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkeva 57 
                       +r++r++kNRe+A rsR+RK+a++ eLe+kv  Le+eN++Lk el++l+ +v+
  Bradi1g17335.1.p 166 RRQKRMIKNRESAARSRARKQAYMNELENKVSRLEEENRRLK-ELKRLEPMVQ 217
                       69****************************************.*****99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003383.4E-12162218IPR004827Basic-leucine zipper domain
PROSITE profilePS5021711.369164208IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.31E-11166208No hitNo description
PfamPF001702.6E-13166217IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1702.6E-14166213No hitNo description
CDDcd147071.35E-18168217No hitNo description
PROSITE patternPS000360169184IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MGVQTMASLG GGGGGGGRQG AVYGLTLNEV ESRLGSPLRS MNLDELLRTV LPAAAAGGGP  60
GPGSGKKTVD EVWRDIESGA RGRQSAAMEV GEMTLEDFLS RAGVPVDGGG AHWLLRQYHP  120
PPRSLPVFGH GGGGGGGFLS PSHAGGGRKR GAGGEDEGGG GGGVERRQKR MIKNRESAAR  180
SRARKQAYMN ELENKVSRLE EENRRLKELK RLEPMVQVQC VTRPEPMLQR LEPMVVHYVT  240
RPESMVVQYV PEPEPEPEKQ LQHQLQLRRT ISASF*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147168RKRGAGGEDEGGGGGGVERRQK
Functional Description ? help Back to Top
Source Description
UniProtBinds to the embryo specification element and the ABA-responsive element (ABRE) of the Dc3 gene promoter and to the ABRE of the Em1 gene promoter. Could participate in abscisic acid-regulated gene expression during seed development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g17335.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014757254.10.0ABSCISIC ACID-INSENSITIVE 5-like protein 5
SwissprotQ9C5Q22e-43AI5L3_ARATH; ABSCISIC ACID-INSENSITIVE 5-like protein 3
TrEMBLA0A0Q3GUA00.0A0A0Q3GUA0_BRADI; Uncharacterized protein
STRINGBRADI1G17335.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44413367
Representative plantOGRP5401580
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41070.36e-25bZIP family protein
Publications ? help Back to Top
  1. Haas BJ, et al.
    Full-length messenger RNA sequences greatly improve genome annotation.
    Genome Biol., 2002. 3(6): p. RESEARCH0029
    [PMID:12093376]
  2. Sakuraba Y,Han SH,Lee SH,Hörtensteiner S,Paek NC
    Arabidopsis NAC016 promotes chlorophyll breakdown by directly upregulating STAYGREEN1 transcription.
    Plant Cell Rep., 2016. 35(1): p. 155-66
    [PMID:26441053]
  3. Kim H, et al.
    ABA-HYPERSENSITIVE BTB/POZ PROTEIN 1 functions as a negative regulator in ABA-mediated inhibition of germination in Arabidopsis.
    Plant Mol. Biol., 2016. 90(3): p. 303-15
    [PMID:26667153]