PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g17210.2.p | ||||||||
Common Name | BRADI_1g17210, LOC100822409 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | bZIP | ||||||||
Protein Properties | Length: 341aa MW: 37769.6 Da PI: 9.7895 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 29.4 | 1.8e-09 | 50 | 89 | 5 | 44 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 k rr+++NReAAr+sR+RKk ++++Le +L + ++ Bradi1g17210.2.p 50 KTLRRLAQNREAARKSRLRKKSYVQQLESSKLKLAQLEQE 89 7889************************855444444444 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 2.7E-6 | 46 | 109 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.335 | 48 | 92 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 1.8E-6 | 50 | 91 | IPR004827 | Basic-leucine zipper domain |
SuperFamily | SSF57959 | 1.21E-6 | 50 | 93 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 2.3E-7 | 51 | 95 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 53 | 68 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 8.7E-34 | 132 | 207 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 341 aa Download sequence Send to blast |
MADASSRTDT STVVDNHSKN HRLEQGQSGA LMASNSSDRS DRSDKPLDQK TLRRLAQNRE 60 AARKSRLRKK SYVQQLESSK LKLAQLEQEL QKARQQGIFI SSSGDQTHAM SGNGALTFDI 120 EYTRWLEEQN KQINELRTAV NAHASDSDLR LIVDGIMAHY DEIFKVKGVA AKADVFHILS 180 GMWKTPAERC FLWLGGFRPS ELLKLLANHL EPLTEQQLLG LTNLQQSSQQ AEDALSQGME 240 ALQQSLAETL AGSLGTSGSS GSSGSSGNVA NYMGQMAMAM GKLGTLENFL RQADNLRQQT 300 LHQMQRILTI RQASRALLAI HDYFSRLRAL SSLWLARPRE * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a negative role in rice basal defense responses to the bacterial blight pathogen Xanthomomas oryzae pv. oryzae (Xoo). May function in both positive and negative regulation of rice defense genes. Binds DNA in vitro (PubMed:16045470). Acts as transcriptional activator when bound to NPR1/NH1 in vitro (PubMed:22353606). Binds to the promoter sequence of CRK10 in vitro (PubMed:27176732). {ECO:0000269|PubMed:16045470, ECO:0000269|PubMed:22353606, ECO:0000269|PubMed:27176732}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g17210.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003562427.1 | 0.0 | transcription factor TGA2.1 | ||||
Refseq | XP_014752950.1 | 0.0 | transcription factor TGA2.1 | ||||
Swissprot | Q7X993 | 0.0 | TGA21_ORYSJ; Transcription factor TGA2.1 | ||||
TrEMBL | I1GQZ3 | 0.0 | I1GQZ3_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G17210.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP486 | 38 | 185 | Representative plant | OGRP722 | 16 | 67 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G12250.2 | 1e-143 | TGACG motif-binding factor 6 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g17210.2.p |
Entrez Gene | 100822409 |
Publications ? help Back to Top | |||
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