PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g16355.1.p | ||||||||
Common Name | BRADI_1g16355, LOC100834855 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | MYB_related | ||||||||
Protein Properties | Length: 345aa MW: 37738.8 Da PI: 7.3689 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 29 | 2.5e-09 | 292 | 340 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqk 46 r++W++ ++ l ++v+++G+g+Wk I + + R+ + k+++++ Bradi1g16355.1.p 292 RKKWSEMQEKSLMEGVEKYGKGNWKEIKIAYPdvfEDRSTVDMKDKFRN 340 789********************************99*******99998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.794 | 287 | 344 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.5E-10 | 288 | 341 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.47E-12 | 289 | 342 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-4 | 291 | 344 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.5E-8 | 292 | 341 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 2.73E-18 | 293 | 343 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0031627 | Biological Process | telomeric loop formation | ||||
GO:0000783 | Cellular Component | nuclear telomere cap complex | ||||
GO:0003691 | Molecular Function | double-stranded telomeric DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MPPLAAADAF LVLEFVAGNR LVPPPAFAAL LASLPSVSPH TSPRLRRGIA LRALDAVFSL 60 SDADAAILLR KARAVLADPD LASCFPDRLT LPVARDDEAA VVDLKRLVDV EWADLPPSTL 120 EIAADRIAGD GALHTWADAD QDTRKKLRLL VGESMELDIL GKLGQGPSKV GADEADLTRE 180 SGKSGHAQEG CSTPHQQDPA KTTTDAPKLV TSATIKGKDK ATSSYVTGLV APDNHKTHPV 240 TGSKRGLMER NRTATVYEWD DSGDSDHERV PHKRQLPTYK KKPEPSFPHK SRKKWSEMQE 300 KSLMEGVEKY GKGNWKEIKI AYPDVFEDRS TVDMKDKFRN MERH* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 142 | 148 | TRKKLRL |
2 | 280 | 292 | KKPEPSFPHKSRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g16355.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003559737.1 | 0.0 | uncharacterized protein LOC100834855 | ||||
Refseq | XP_010233480.1 | 0.0 | uncharacterized protein LOC100834855 | ||||
TrEMBL | I1GQT3 | 0.0 | I1GQT3_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G16355.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13998 | 22 | 24 | Representative plant | OGRP1503 | 14 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G15720.1 | 3e-10 | TRF-like 5 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g16355.1.p |
Entrez Gene | 100834855 |