PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g16200.1.p
Common NameBRADI_1g16200, LOC100834555
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 360aa    MW: 38427.8 Da    PI: 5.8952
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g16200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.00097221243123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       y+Cp Cg+ F +   L  H  +H
  Bradi1g16200.1.p 221 YECPGCGRAFQSYQALGGHRASH 243
                       99********9999888888777 PP
2zf-C2H212.80.00036297319123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++Cp+C+k+F +   L  H r+H
  Bradi1g16200.1.p 297 FECPICSKVFGSGQALGGHKRSH 319
                       89**************9999999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0841436IPR015880Zinc finger, C2H2-like
SuperFamilySSF576674.63E-81436No hitNo description
PfamPF139124.6E-61436IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.0141437IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.5E-41436IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002801636IPR007087Zinc finger, C2H2
SuperFamilySSF576674.63E-8216243No hitNo description
PfamPF139126.9E-11220245IPR007087Zinc finger, C2H2
SMARTSM003550.21221243IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.492221248IPR007087Zinc finger, C2H2
PROSITE patternPS000280223243IPR007087Zinc finger, C2H2
SuperFamilySSF576677.05E-5295320No hitNo description
PROSITE profilePS5015710.492297320IPR007087Zinc finger, C2H2
SMARTSM003550.026297319IPR015880Zinc finger, C2H2-like
PfamPF139126.9E-13297320IPR007087Zinc finger, C2H2
PROSITE patternPS000280299319IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 360 aa     Download sequence    Send to blast
MDDMVVLSSS STRHSCKVCG KGFPCGRSLG GHMRSHALAE VAAAAAVGED DETDSDEEDE  60
EQRRWTMPIS GARASNTNAS GAGYGLRENP KKTRRLSRSA GADGAMEEED QDDMLIPLPT  120
EAAVMAAPRR RRRSMRVPAP APAFDKEPED VALCLIMLSR DTAGLCNLPS SESSEKGDGR  180
KKLLAYDGSD DDVLYTEMTN NNNNNKAAIS SSENNPKRGR YECPGCGRAF QSYQALGGHR  240
ASHKRINSNC CTTKVFLDQP EPSVDTNVSS FSTPSSPPPS PQAMAPVVVK PKNNVKFECP  300
ICSKVFGSGQ ALGGHKRSHS IAGELYDRTH ADAIILDADQ SLLAAGFLDL NLPAPGVQD*
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g16200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559736.20.0zinc finger protein ZAT5
TrEMBLI1GQS70.0I1GQS7_BRADI; Uncharacterized protein
STRINGBRADI1G16200.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38613573
Representative plantOGRP1266344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.11e-22C2H2-like zinc finger protein