PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g16120.2.p
Common NameBRADI_1g16120, LOC100832704
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 492aa    MW: 52268.2 Da    PI: 7.6588
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g16120.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.51.8e-30206262259
                       --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       dDgynWrKYGqK vkg e+prsYY+Ct+agCpvkkkversa  +++++i+Y+g+Hnh+
  Bradi1g16120.2.p 206 DDGYNWRKYGQKAVKGGEYPRSYYKCTQAGCPVKKKVERSA-CGEITQIIYRGQHNHQ 262
                       8****************************************.9**************8 PP
2WRKY98.73.6e-31374432159
                       ---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                       ldDgy+WrKYGqK+vkg+++prsYY+Ct++gC vkk++er+++d + v++tYeg+H h+
  Bradi1g16120.2.p 374 LDDGYRWRKYGQKVVKGNPHPRSYYKCTFQGCDVKKHIERCSQDSTDVITTYEGKHSHD 432
                       59********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.808.9E-28197264IPR003657WRKY domain
SuperFamilySSF1182902.88E-24203264IPR003657WRKY domain
SMARTSM007745.2E-32205263IPR003657WRKY domain
PfamPF031061.5E-23206262IPR003657WRKY domain
PROSITE profilePS5081124.306206264IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.9E-35361434IPR003657WRKY domain
SuperFamilySSF1182901.83E-28366434IPR003657WRKY domain
PROSITE profilePS5081135.519369434IPR003657WRKY domain
SMARTSM007741.2E-35374433IPR003657WRKY domain
PfamPF031067.4E-24375432IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 492 aa     Download sequence    Send to blast
MAAHEASASG GEGARRPPPR PALSLPPRAA AESFFAAAGS AAESSPGPLT LAAALFPDMP  60
SPAFHGSFTQ LLVGAMGSPA ASSASGPSPP SPFPVPPGLS RTALLGSPSL FSPTGNFEMS  120
HRQALAQVTA QAVHSQYTIV NQADYPLPFS STTSAFTSQH VNSSANITST EETPTPPSLT  180
GNSNFKPNEV SQGFQTSALT VDKPADDGYN WRKYGQKAVK GGEYPRSYYK CTQAGCPVKK  240
KVERSACGEI TQIIYRGQHN HQRPPKRRSK DGGSLLDEVD DFHENGDTLN RSEQGSQDHS  300
AKFEVSNDGI TVPSMSKRAE GDDQSSGSSD SEEKACDEAG ADNGDGGSTN AKKRHVPAPA  360
QRIIVQTTSE VDLLDDGYRW RKYGQKVVKG NPHPRSYYKC TFQGCDVKKH IERCSQDSTD  420
VITTYEGKHS HDVPAARNSS HASNANASSS SSLRHRAQNT ASSSQPSLRR SALRTASSDS  480
SLQLKEENEI T*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A4e-35191435578Probable WRKY transcription factor 4
2lex_A4e-35191435578Probable WRKY transcription factor 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1262267RPPKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. Has a positive role in resistance to necrotrophic pathogens (e.g. Botrytis cinerea), but a negative effect on plant resistance to biotrophic pathogens (e.g. Pseudomonas syringae). {ECO:0000269|PubMed:18570649, ECO:0000269|PubMed:22219184}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g16120.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By biotic and abiotic stresses such as pathogen infection (e.g. Botrytis cinerea and Pseudomonas syringae), salicylic acid (SA), jasmonic acid (JA), ethylene (ACC), liquid infiltration or spraying, and strongly during leaf senescence. {ECO:0000269|PubMed:11449049, ECO:0000269|PubMed:11722756, ECO:0000269|PubMed:18570649}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559732.10.0probable WRKY transcription factor 4
RefseqXP_010233399.10.0probable WRKY transcription factor 4
RefseqXP_024313340.10.0probable WRKY transcription factor 4
SwissprotQ9XI901e-107WRKY4_ARATH; Probable WRKY transcription factor 4
TrEMBLI1GQR90.0I1GQR9_BRADI; Uncharacterized protein
STRINGBRADI1G16120.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134538122
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13960.18e-86WRKY DNA-binding protein 4
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Aamir M, et al.
    Structural and Functional Insights into WRKY3 and WRKY4 Transcription Factors to Unravel the WRKY-DNA (W-Box) Complex Interaction in Tomato (Solanum lycopersicum L.). A Computational Approach.
    Front Plant Sci, 2017. 8: p. 819
    [PMID:28611792]