PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g14750.1.p | ||||||||
Common Name | BRADI_1g14750, LOC100831213 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 222aa MW: 23360.4 Da PI: 7.7682 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.6 | 9.5e-05 | 80 | 102 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ Cgk F++ L H +H Bradi1g14750.1.p 80 YTCSVCGKAFPSYQALGGHKASH 102 9***********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 3.6E-13 | 80 | 104 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.783 | 80 | 107 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.3E-10 | 80 | 102 | No hit | No description |
SMART | SM00355 | 0.007 | 80 | 102 | IPR015880 | Zinc finger, C2H2-like |
Gene3D | G3DSA:3.30.160.60 | 7.6E-4 | 80 | 102 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE pattern | PS00028 | 0 | 82 | 102 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.3E-10 | 137 | 164 | No hit | No description |
Pfam | PF13912 | 3.8E-14 | 141 | 166 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.349 | 142 | 164 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.12 | 142 | 164 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 144 | 164 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006979 | Biological Process | response to oxidative stress | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009644 | Biological Process | response to high light intensity | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0010117 | Biological Process | photoprotection | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0015979 | Biological Process | photosynthesis | ||||
GO:0035264 | Biological Process | multicellular organism growth | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MAVEAVLDAA AIPWPAASDQ QEETTTQHGG LQYCAEGWGK RKRTRRQQQQ PPTEEEHLAL 60 SLLMLARGHR DGTSSLQAQY TCSVCGKAFP SYQALGGHKA SHRPKASPPF IGAVDEPAAN 120 NTPSPAASSS TCSGAATAGK VHECSVCKKT FPTGQALGGH KRCHYEGPLG GSGSASRGFD 180 LNLPALPDII VAEPRYCVPA AEEEEVLSPM AFKKPRLMIP A* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Potential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00162 | DAP | Transfer from AT1G27730 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g14750.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003562286.1 | 1e-163 | zinc finger protein 1 | ||||
Swissprot | Q42430 | 2e-40 | ZFP1_WHEAT; Zinc finger protein 1 | ||||
TrEMBL | I1GQB7 | 1e-161 | I1GQB7_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G14750.1 | 1e-162 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1022 | 36 | 113 | Representative plant | OGRP131 | 15 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G27730.1 | 3e-36 | salt tolerance zinc finger |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g14750.1.p |
Entrez Gene | 100831213 |