PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g14560.10.p
Common NameBRADI_1g14560
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family B3
Protein Properties Length: 474aa    MW: 53885.7 Da    PI: 9.5276
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g14560.10.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B331.62.9e-1021106895
                        -HHHHTT-EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEE CS
                 B3   8 sdvlksgrlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvk 95 
                         d ++++ +v+pk++a+++   +++s+ +t++   + ++W  k++ r  +gr+ l ++   Fv++n+L +gD ++F+ + + ++++++v+
  Bradi1g14560.10.p  21 MDKNSRHSMVIPKDYATAYF--PHRSQIITFQLaGQTKTWHCKFRARPDGGRCNLYGC--YFVRDNHLLQGDLCLFQPMTNdEGTTFTVM 106
                        47788999***********7..345667777764677*******99999999999954..5****************8766477766654 PP
2B3421.6e-132433261598
                        -EE--HHH.HTT---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE- CS
                 B3  15 rlvlpkkfaeehggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvfr 98 
                        +l++ k++a+ +   ++es  +tl+   ++++W  ++  rk ++++ +++ W++Fv +n+++egD+++F   +  ++ +++v+++r
  Bradi1g14560.10.p 243 CLIICKEYATVYF--PRESASVTLQRpGKSKKWHPRFYKRKDGSMHKIRGQWSDFVCDNRVEEGDICIFVPAKGgRRSTFTVHLLR 326
                        49999***99997..457778999995666*******66777778*************************6644466667888877 PP
3B350.92.8e-163944682097
                        HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS.SEE..EEEEE CS
                 B3  20 kkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr.sefelvvkvf 97 
                         +fa+ + ++k +  + +l + +g+ W  k+++r +  r vl++GW++Fv +n+L++gD+++F+l+++ ++ ++vv+++
  Bradi1g14560.10.p 394 AQFAAVY-LPKGG--QTMLLQHTGKIWHTKMRVRHGT-RWVLGEGWRKFVIDNRLQVGDICLFELKKNrRKLTMVVHII 468
                        5666555.33333..4677888*********755554.579*************************9889999999986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508636.79514109IPR003340B3 DNA binding domain
CDDcd100173.04E-915105No hitNo description
SuperFamilySSF1019367.72E-1116105IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.8E-1016105IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.1417113IPR003340B3 DNA binding domain
PfamPF023622.3E-921106IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.6E-18221326IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.79E-18222327IPR015300DNA-binding pseudobarrel domain
CDDcd100176.25E-19228326No hitNo description
SMARTSM010192.2E-4228328IPR003340B3 DNA binding domain
PROSITE profilePS5086310.856229328IPR003340B3 DNA binding domain
PfamPF023624.8E-12231326IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.105.6E-20365468IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.62E-20366471IPR015300DNA-binding pseudobarrel domain
CDDcd100175.61E-19371468No hitNo description
PROSITE profilePS5086312.097373471IPR003340B3 DNA binding domain
SMARTSM010194.6E-7373472IPR003340B3 DNA binding domain
PfamPF023621.4E-14389468IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MSNTCECCKK CGKAKRFVRR MDKNSRHSMV IPKDYATAYF PHRSQIITFQ LAGQTKTWHC  60
KFRARPDGGR CNLYGCYFVR DNHLLQGDLC LFQPMTNDEG TTFTVMTHVL PKASIDHPSD  120
IIPSSASTKM TSQVCVKEEQ SDASRRPVGC ESGSSSHSRN TTNKTVISSP SEESGEDNPS  180
GCNFFDSDDV CTPPGHDYVL SRWSYLAEAQ KEKVVMLIRK VQPRSRVFVA IMRKSNVQPL  240
YPCLIICKEY ATVYFPRESA SVTLQRPGKS KKWHPRFYKR KDGSMHKIRG QWSDFVCDNR  300
VEEGDICIFV PAKGGRRSTF TVHLLRVEND MHAGPSDEQE KPYILSQTSS LSPLQQSLVE  360
DKTQAIQSEA PLYVAIMNNT SVGVNQRYTM EFGAQFAAVY LPKGGQTMLL QHTGKIWHTK  420
MRVRHGTRWV LGEGWRKFVI DNRLQVGDIC LFELKKNRRK LTMVVHIIFS HQC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1453460LKKNRRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g14560.10.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010232581.10.0B3 domain-containing protein Os03g0620400 isoform X1
RefseqXP_010232586.10.0B3 domain-containing protein Os03g0620400 isoform X1
RefseqXP_024313261.10.0B3 domain-containing protein Os03g0620400 isoform X1
TrEMBLA0A0Q3GTD50.0A0A0Q3GTD5_BRADI; Uncharacterized protein
STRINGBRADI1G14560.10.0(Brachypodium distachyon)