PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g13971.2.p | ||||||||
Common Name | BRADI_1g13971 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | LSD | ||||||||
Protein Properties | Length: 307aa MW: 33279.4 Da PI: 9.7499 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 28.3 | 3e-09 | 138 | 162 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr +L YP GApsV+C C+++ Bradi1g13971.2.p 138 CHGCRRVLCYPSGAPSVCCGACQAI 162 ***********************97 PP | |||||||
2 | zf-LSD1 | 39.2 | 1.1e-12 | 177 | 201 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+Y+r+A VRC++C tV Bradi1g13971.2.p 177 CGGCRTLLMYTRNADTVRCSCCRTV 201 ************************9 PP | |||||||
3 | zf-LSD1 | 52.2 | 9.7e-17 | 215 | 239 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Crt+L+YP+GApsV+CalC++V Bradi1g13971.2.p 215 CGQCRTTLMYPYGAPSVKCALCNFV 239 ***********************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 2.1E-10 | 135 | 165 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.1E-6 | 138 | 162 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 3.5E-14 | 174 | 204 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.8E-10 | 177 | 201 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 2.1E-12 | 212 | 240 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 1.7E-14 | 215 | 239 | IPR005735 | Zinc finger, LSD1-type |
Sequence ? help Back to Top |
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Protein Sequence Length: 307 aa Download sequence Send to blast |
MQHDIGTRAV AWTSCRIQRA IPDTGPFSLP AGFKGKTKGT RNRVIKLKLS AVPRPESVNQ 60 IDYQPSTPSP RPCQVKYSQS EFNFSRSDPL SPLTRHRRRR EPPPRVPPSR SELFSEPLER 120 RDERPVSSRA GMHSQIVCHG CRRVLCYPSG APSVCCGACQ AITIVPPPAL EMAQLICGGC 180 RTLLMYTRNA DTVRCSCCRT VNLVRSVNNI AHVNCGQCRT TLMYPYGAPS VKCALCNFVT 240 NTGINTMAPT PCPVPTPNGS SYNVPSTSVS TTQPQNVTVV VENPMTVDGK GKLVSNVVVG 300 ITPGKQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g13971.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003562028.1 | 1e-122 | protein LOL3 | ||||
Swissprot | Q6ASS2 | 4e-94 | LOL3_ORYSJ; Protein LOL3 | ||||
TrEMBL | A0A0Q3NB55 | 0.0 | A0A0Q3NB55_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G13970.1 | 1e-115 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G20380.7 | 4e-55 | LSD family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g13971.2.p |
Publications ? help Back to Top | |||
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