PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g13971.1.p
Common NameBRADI_1g13971
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family LSD
Protein Properties Length: 333aa    MW: 36734.7 Da    PI: 9.2613
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g13971.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD128.13.3e-09138162125
           zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                       C+gCr +L YP GApsV+C  C+++
  Bradi1g13971.1.p 138 CHGCRRVLCYPSGAPSVCCGACQAI 162
                       ***********************97 PP
2zf-LSD139.11.2e-12177201125
           zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                       CggCrtlL+Y+r+A  VRC++C tV
  Bradi1g13971.1.p 177 CGGCRTLLMYTRNADTVRCSCCRTV 201
                       ************************9 PP
3zf-LSD152.11.1e-16215239125
           zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdtV 25 
                       Cg+Crt+L+YP+GApsV+CalC++V
  Bradi1g13971.1.p 215 CGQCRTTLMYPYGAPSVKCALCNFV 239
                       ***********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR010532.4E-10135165IPR005735Zinc finger, LSD1-type
PfamPF069431.2E-6138162IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010533.9E-14174204IPR005735Zinc finger, LSD1-type
PfamPF069432.0E-10177201IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.4E-12212240IPR005735Zinc finger, LSD1-type
PfamPF069431.9E-14215239IPR005735Zinc finger, LSD1-type
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MQHDIGTRAV AWTSCRIQRA IPDTGPFSLP AGFKGKTKGT RNRVIKLKLS AVPRPESVNQ  60
IDYQPSTPSP RPCQVKYSQS EFNFSRSDPL SPLTRHRRRR EPPPRVPPSR SELFSEPLER  120
RDERPVSSRA GMHSQIVCHG CRRVLCYPSG APSVCCGACQ AITIVPPPAL EMAQLICGGC  180
RTLLMYTRNA DTVRCSCCRT VNLVRSVNNI AHVNCGQCRT TLMYPYGAPS VKCALCNFVT  240
NTGINTMAPT PCPVPTPNGS SYNVPSTSVV CLYPCILQPN IFFLRTKSDL FLLCFIFWQS  300
TTQPQNVTVV VENPMTVDGK GKLVSPLFFC LY*
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g13971.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP1002151e-116FP100215.1 Phyllostachys edulis cDNA clone: bphylf025n04, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003562028.11e-107protein LOL3
SwissprotQ6ASS23e-83LOL3_ORYSJ; Protein LOL3
TrEMBLA0A0Q3GUL90.0A0A0Q3GUL9_BRADI; Uncharacterized protein
STRINGBRADI1G13970.11e-138(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134738124
Representative plantOGRP11461753
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32540.16e-51lsd one like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]