PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g13879.1.p
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 262aa    MW: 29534.5 Da    PI: 9.2707
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g13879.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding30.11.1e-09755346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                      rWT eE+  l  +++++G g+W  I r          R+  ++k++w++
  Bradi1g13879.1.p  7 RWTSEEEAALRAGIAKHGVGSWQVILRDPEfssilRYRSNVDLKDKWRN 55
                      9**********************************99***********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512949.808161IPR017930Myb domain
SuperFamilySSF466891.64E-14258IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-11456IPR009057Homeodomain-like
SMARTSM007172.4E-6459IPR001005SANT/Myb domain
CDDcd116602.57E-17657No hitNo description
PfamPF002493.2E-6755IPR001005SANT/Myb domain
SuperFamilySSF467851.2E-13103181IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.107.7E-15104175IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM005263.3E-7104169IPR005818Linker histone H1/H5, domain H15
PROSITE profilePS5150419.502106174IPR005818Linker histone H1/H5, domain H15
PfamPF005381.4E-8111167IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0031627Biological Processtelomeric loop formation
GO:0000784Cellular Componentnuclear chromosome, telomeric region
GO:0000786Cellular Componentnucleosome
GO:0003691Molecular Functiondouble-stranded telomeric DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MGAPKHRWTS EEEAALRAGI AKHGVGSWQV ILRDPEFSSI LRYRSNVDLK DKWRNINTFF  60
TVLKNRATPK NSDHSMAIRT VASNGDEQPI SSVCSEVWNS LQPKKSRWRL NDIILKSVKN  120
LNEPTGSHRT TIANYIEEQY RPSDDFDHIL SAKLKDLITS GKLIKVNRKY RIAPALYSEE  180
RNPKILLLED VRREPLRIGN DDSKDLTKYQ VNAELAHMLT MTAEEAASTA AQAEAAEADA  240
LVAQAFAEAA LLTLKNRNVP EL
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats, but may also bind to the single telomeric strand. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g13879.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024313575.11e-169LOW QUALITY PROTEIN: single myb histone 6-like
SwissprotC0HIA39e-98SMH6_MAIZE; Single myb histone 6
TrEMBLA0A2K2DJD30.0A0A2K2DJD3_BRADI; Uncharacterized protein (Fragment)
STRINGBRADI1G13880.11e-150(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP132438110
Representative plantOGRP8551659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.38e-50telomere repeat binding factor 1
Publications ? help Back to Top
  1. Soderlund C, et al.
    Sequencing, mapping, and analysis of 27,455 maize full-length cDNAs.
    PLoS Genet., 2009. 5(11): p. e1000740
    [PMID:19936069]