PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi1g13310.1.p

Common Name

BRADI_1g13310, LOC100844318

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

FAR1

Protein Properties

Length: 1064aa MW: 116188 Da PI: 5.7244

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi1g13310.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	101.6	7.6e-32	73	173	2	91
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...........tekerrtraetrtgCkaklkvkkekdgkwevtklel 83 fYn YA++vGFs+r+s +++s+r+g+i++r+fvC keg+r+ + k+ + + rrtra+tr+gCka+++vkk+++gkw +tkle+ Bradi1g13310.1.p 73 FYNVYAHRVGFSTRISVMHRSRRDGSIMSRQFVCAKEGFRTYRGKNeglasspggedSGRGRRTRAVTRVGCKAMIRVKKQDNGKWSITKLET 165 *****************************************************99999***************************** PP FAR1 84 eHnHelap 91 HnH+l+p Bradi1g13310.1.p 166 AHNHPLVP 173 ***986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.8E-30	73	173	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	5.0E-24	291	381	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.237	569	605	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.9E-9	575	604	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.7E-5	580	607	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1064 aa Download sequence Send to blast
MERGAAGSDQ GTPDSEMGDA DNDSVGYGTE MELDAGNGST GAPPAYAARP SVHDGIDPFE 60 GMEFDDEEDA WTFYNVYAHR VGFSTRISVM HRSRRDGSIM SRQFVCAKEG FRTYRGKNEG 120 LASSPGGEDS GRGRRTRAVT RVGCKAMIRV KKQDNGKWSI TKLETAHNHP LVPQNQAHCL 180 RPHKPLSECG KQRSYGVRRN GGMFLAIEPP PPPLTPPVPQ TSIAQLVPHY IGDGIGNAAR 240 VILDYVKRMQ AEDPAFFYAM QFVEGHPVGN VFWSDARARM AFKDFGDAVF LDDYCKRNKY 300 ELPLVTFTGV NHHCQPVLFG CAVIRDNSEA SFVWLFETLL LAMSGQHPAS LTTEYDGAMQ 360 SAIQKVLPQT RHRFCRWHIL NEAQYKLSHF VNAFPSFHDD LVNCINISET VDEFEANWQA 420 LISKVGSGNN EWLDLMYNCR QQWVPVYLRD TFFGDEPSRQ ECTSRSSFFE SYIIAKTNSQ 480 SFIQQYEKAL DSCYEKEVRE EFETKYSLPD IKTSSPIEKH GADLYTRTMF LKFQQELIDA 540 SAFTLEMVGE DRKACMYKVT TSQGSGKPHM VEFSSSESSA KCSCQMFEYF GIVCRHILTV 600 FGARGVLTLP SQYIVKRWTK DAIDRCSNKK FDDVSRAKEP KEEQRSNVED GEQSQTWRYN 660 SLCREALRYA EEGASSAEVY IVAMQALEEA ANKVNMVKRS VGQVAPLAVM PIAAQPPESS 720 RKNQDSFGQP KKRKRNSNNS RENSAPTQSM YTQQPVNFPS TSNGSQGPSQ VVAAAPISLC 780 TEYRQTSGAN NSTDGSTTPA SVAVNKLYGL SDRGASTSAP SSSANVLQGG ETKSSGIASQ 840 INEGHELSQA NGNKGGDIDM ANSTASPQLV TVPIGFCMPS VDNSKTSTAG INSSNSGGVM 900 SNGNASFGLH QSQSSAQVPA THPEAKTRLN NIDSPATPEG SSIRAAAIAA GARIASPSDA 960 ASIIKASQSK GAIHIRPGKS LPNYLKPLTP KPLSSLPPVN LTSSGNASSS HMQLGQFYSG 1020 DSAAAKDSIF GSTDGSDEDT DDDDEDSDDD DDERLTGDEV EQE*

Sequence ? help Back to Top

Protein Sequence Length: 1064 aa Download sequence Send to blast

MERGAAGSDQ GTPDSEMGDA DNDSVGYGTE MELDAGNGST GAPPAYAARP SVHDGIDPFE  60
GMEFDDEEDA WTFYNVYAHR VGFSTRISVM HRSRRDGSIM SRQFVCAKEG FRTYRGKNEG  120
LASSPGGEDS GRGRRTRAVT RVGCKAMIRV KKQDNGKWSI TKLETAHNHP LVPQNQAHCL  180
RPHKPLSECG KQRSYGVRRN GGMFLAIEPP PPPLTPPVPQ TSIAQLVPHY IGDGIGNAAR  240
VILDYVKRMQ AEDPAFFYAM QFVEGHPVGN VFWSDARARM AFKDFGDAVF LDDYCKRNKY  300
ELPLVTFTGV NHHCQPVLFG CAVIRDNSEA SFVWLFETLL LAMSGQHPAS LTTEYDGAMQ  360
SAIQKVLPQT RHRFCRWHIL NEAQYKLSHF VNAFPSFHDD LVNCINISET VDEFEANWQA  420
LISKVGSGNN EWLDLMYNCR QQWVPVYLRD TFFGDEPSRQ ECTSRSSFFE SYIIAKTNSQ  480
SFIQQYEKAL DSCYEKEVRE EFETKYSLPD IKTSSPIEKH GADLYTRTMF LKFQQELIDA  540
SAFTLEMVGE DRKACMYKVT TSQGSGKPHM VEFSSSESSA KCSCQMFEYF GIVCRHILTV  600
FGARGVLTLP SQYIVKRWTK DAIDRCSNKK FDDVSRAKEP KEEQRSNVED GEQSQTWRYN  660
SLCREALRYA EEGASSAEVY IVAMQALEEA ANKVNMVKRS VGQVAPLAVM PIAAQPPESS  720
RKNQDSFGQP KKRKRNSNNS RENSAPTQSM YTQQPVNFPS TSNGSQGPSQ VVAAAPISLC  780
TEYRQTSGAN NSTDGSTTPA SVAVNKLYGL SDRGASTSAP SSSANVLQGG ETKSSGIASQ  840
INEGHELSQA NGNKGGDIDM ANSTASPQLV TVPIGFCMPS VDNSKTSTAG INSSNSGGVM  900
SNGNASFGLH QSQSSAQVPA THPEAKTRLN NIDSPATPEG SSIRAAAIAA GARIASPSDA  960
ASIIKASQSK GAIHIRPGKS LPNYLKPLTP KPLSSLPPVN LTSSGNASSS HMQLGQFYSG  1020
DSAAAKDSIF GSTDGSDEDT DDDDEDSDDD DDERLTGDEV EQE*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi1g13310.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003559622.3	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	I1GPV5	0.0	I1GPV5_BRADI; Uncharacterized protein
STRING	BRADI1G13310.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP18	32	967
Representative plant	OGRP30	12	351

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-166	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Bradi1g13310.1.p
Entrez Gene	100844318