PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g12770.2.p
Common NameBRADI_1g12770, LOC100836083
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 371aa    MW: 38578.9 Da    PI: 4.9133
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g12770.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH44.23.3e-14180226455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        h ++Er+RR++iN++f eL +++P +     kK++Ka+iL  A++++k+Lq
  Bradi1g12770.2.p 180 DHIIAERKRREKINQRFIELSTVIPGL-----KKMDKATILSDATRHVKDLQ 226
                       699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.58176225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.57E-16180240IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.3E-12180226IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-17180237IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.32E-15181230No hitNo description
SMARTSM003531.4E-14182231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MDESALFMEW AMETLEHEHL LPPAVVSGGG DEANFPSLQA LRDVSHAALV LEELLTDAHA  60
ANSGSSGDTD GGSGGGVHFS STAPGAMDQQ HDVWLPPSPP ANANASGNGG GPNVSLPGPV  120
MSWNFSAASA QPAADAGAPD AAAARLYEPG LASSQTSRRA SANSTASTGH TPTPAPYAQD  180
HIIAERKRRE KINQRFIELS TVIPGLKKMD KATILSDATR HVKDLQEKIK ALEAASGSNS  240
RSVETVVLVK KPCYGASEDN GSSGAPAPGR SLQPLPEIEA RFAENGVMVR ILCEDAKGVV  300
VRVLSEVEDG LRLSVTHANV MAFTACTLII TITAKVEEGS KVTAEEVVGR LNSALQQHST  360
STSTEETGNY *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1184189ERKRRE
2185190RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g12770.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3659956e-91AK365995.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2039J24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559601.10.0transcription factor bHLH18
TrEMBLA0A0Q3KS320.0A0A0Q3KS32_BRADI; Uncharacterized protein
STRINGBRADI1G12770.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP92731143
Representative plantOGRP1191336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-43bHLH family protein