PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g12650.1.p
Common NameBRADI_1g12650, LOC100838550
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRF
Protein Properties Length: 418aa    MW: 46779.5 Da    PI: 9.6814
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g12650.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC73.62.2e-23144188145
               WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                       d+epgrCrRtDGKkWRCs+++++ +k+CErH++r+r+rsrk++e+
  Bradi1g12650.1.p 144 DPEPGRCRRTDGKKWRCSKEAMAEHKYCERHINRNRHRSRKPVEN 188
                       79****************************************997 PP
2QLQ56.77.3e-2085120237
               QLQ   2 aFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 
                       +FT++Q+++L++Q+l+yKyL+a++P+P+ Ll  i+k
  Bradi1g12650.1.p  85 PFTPSQWMELEHQALIYKYLNAKAPIPSSLLISISK 120
                       8******************************99975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009514.1E-1184120IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.76285120IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.5E-1485118IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166724.151144188IPR014977WRC domain
PfamPF088791.5E-19145187IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 418 aa     Download sequence    Send to blast
MLPELPTAAM ELGQVLGFTV PAPKESDNSL MKRSNFTQAA ASYPSPFLDE QKMLRFSKAA  60
HTQPSGMGFG RPNEQRFLLS RTKMPFTPSQ WMELEHQALI YKYLNAKAPI PSSLLISISK  120
SFISSSNKMA WRPVYQGFTN TDSDPEPGRC RRTDGKKWRC SKEAMAEHKY CERHINRNRH  180
RSRKPVENQT RKTAKETTAG SLSSPVSQGN SKKAKASNEL KPGSDSYWTD SLSRTMVSKA  240
RANKPEEGST VPPLNSTNHT LSLLSQLKQQ NKQGKFSPTV DSESISSNTV LKPWERSNQQ  300
SSKDISCTQL HDRECLQSVL QNFSLHKNDK IESHKNKASN HVPVTSPFYS CPEGSGNSRL  360
TSDMTRVQED CISSSWEMPQ GGPLGEILTN SKNTEELTNK CESRSYGWLL NLDDHEL*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g12650.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003561362.10.0growth-regulating factor 9 isoform X1
SwissprotQ9FRG80.0GRF9_ORYSJ; Growth-regulating factor 9
TrEMBLI1GPM80.0I1GPM8_BRADI; Uncharacterized protein
STRINGBRADI1G12650.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131242529
Representative plantOGRP1393344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22840.12e-35growth-regulating factor 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]