PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bradi1g12330.5.p | ||||||||
Common Name | BRADI_1g12330 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 297aa MW: 31765.7 Da PI: 4.704 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 52.3 | 7.5e-17 | 198 | 234 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nCgt++ Tp +Rrgp g++tLCnaCGl+++ kg+ Bradi1g12330.5.p 198 CQNCGTSEkmTPAMRRGPAGPRTLCNACGLMWANKGT 234 **********************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51320 | 14.504 | 57 | 92 | IPR010399 | Tify domain |
SMART | SM00979 | 8.7E-9 | 57 | 92 | IPR010399 | Tify domain |
Pfam | PF06200 | 1.1E-12 | 59 | 91 | IPR010399 | Tify domain |
PROSITE profile | PS51017 | 13.255 | 126 | 168 | IPR010402 | CCT domain |
Pfam | PF06203 | 2.3E-14 | 126 | 166 | IPR010402 | CCT domain |
SMART | SM00401 | 7.4E-9 | 192 | 245 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 1.24E-10 | 196 | 241 | No hit | No description |
CDD | cd00202 | 1.37E-15 | 197 | 236 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 5.8E-14 | 197 | 236 | IPR013088 | Zinc finger, NHR/GATA-type |
PROSITE pattern | PS00344 | 0 | 198 | 225 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 2.0E-14 | 198 | 234 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 297 aa Download sequence Send to blast |
MSDAAAAQEA DADMRDVDAA APAPSEDDAG EEEEGDKEGE EELALAEEPP VSLVPALPAN 60 PNQLTLLFQG EVYVFESVTP DKVQAVLLLL GTGEIPPDLA GMVLRSQHEN RGYDDLLQRT 120 DIPAKRVASL IRFREKRKGR NFDKKIRYAV RKEVALRMQR RKGQFAGRAN LEGESPSPGC 180 DPASQGSGQD FLSRESKCQN CGTSEKMTPA MRRGPAGPRT LCNACGLMWA NKGTLRSCLK 240 AKGEAPMVAI EQIGIDIKAL TSQNNDNVAP GNVEAIGDST HANVAVIEGV PKAQSE* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bradi1g12330.5.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By drought and salt stresses. {ECO:0000269|PubMed:19618278}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK354746 | 1e-144 | AK354746.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1010K24. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003559571.1 | 0.0 | GATA transcription factor 18 isoform X2 | ||||
Swissprot | Q10F25 | 1e-134 | GAT18_ORYSJ; GATA transcription factor 18 | ||||
TrEMBL | I1GPJ0 | 0.0 | I1GPJ0_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G12330.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3460 | 37 | 73 | Representative plant | OGRP831 | 16 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G21175.2 | 3e-68 | ZIM-like 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bradi1g12330.5.p |
Publications ? help Back to Top | |||
---|---|---|---|
|