PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi1g11060.1.p

Common Name

BRADI_1g11060, LOC100831687

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

TCP

Protein Properties

Length: 386aa MW: 41479.9 Da PI: 7.162

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi1g11060.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	149.7	1.9e-46	118	275	1	136
TCP 1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...ssssa..sec..eaesssssasnss 86 aa++kdrhski+T++g+RdRR+Rls+++a++fF+Lqd+LGfdk+skt++WLl+ +k ai e + t + +a sec + + ss s s + Bradi1g11060.1.p 118 AAARKDRHSKICTAGGMRDRRMRLSLDVARKFFALQDMLGFDKASKTVQWLLNTSKSAIREVMATddmD--PAhsSECedD-DGSSISLS--N 205 589************************************************************8543..3323567532.22222222..1 PP TCP 87 sg....................kaaksaakskksqksaasalnlakesrakarararertrekmriknkl 136 + ++a++ +k+++++ a+++ ++kesr kar+rarert+ek+r+++++ Bradi1g11060.1.p 206 MPapekkgdrgegkkpataraaRRAANLPKPSRKSGGANAHTIPDKESRTKARERARERTKEKNRMRWVT 275 1134556677888889999864444444477777777777788888*******************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	4.4E-46	120	271	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	34.798	121	179	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	11.786	251	268	IPR017888	CYC/TB1, R domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0048831	Biological Process	regulation of shoot system development

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
MFPLCDSPSP MDLPLYQQLQ LSPPSLKPDP EDHHHQSSFF YYHSSPAFAG ADAAFHHSCY 60 LDPGAATLPS AEIDCSPPPE LSLMDQALPA AGNTAQGTEH HGSGSGSGVG ALESRAAAAA 120 RKDRHSKICT AGGMRDRRMR LSLDVARKFF ALQDMLGFDK ASKTVQWLLN TSKSAIREVM 180 ATDDMDPAHS SECEDDDGSS ISLSNMPAPE KKGDRGEGKK PATARAARRA ANLPKPSRKS 240 GGANAHTIPD KESRTKARER ARERTKEKNR MRWVTLASTI NLESAARDDE LIMASPNNNL 300 NRSSSSSMNT AASADKLEER CCTNGGRTVQ EASIASHAIM AGAFGNGGTY GSGSSSGSNY 360 YYQHQQLEEQ QWELGGVVFA NSRLY*

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

MFPLCDSPSP MDLPLYQQLQ LSPPSLKPDP EDHHHQSSFF YYHSSPAFAG ADAAFHHSCY  60
LDPGAATLPS AEIDCSPPPE LSLMDQALPA AGNTAQGTEH HGSGSGSGVG ALESRAAAAA  120
RKDRHSKICT AGGMRDRRMR LSLDVARKFF ALQDMLGFDK ASKTVQWLLN TSKSAIREVM  180
ATDDMDPAHS SECEDDDGSS ISLSNMPAPE KKGDRGEGKK PATARAARRA ANLPKPSRKS  240
GGANAHTIPD KESRTKARER ARERTKEKNR MRWVTLASTI NLESAARDDE LIMASPNNNL  300
NRSSSSSMNT AASADKLEER CCTNGGRTVQ EASIASHAIM AGAFGNGGTY GSGSSSGSNY  360
YYQHQQLEEQ QWELGGVVFA NSRLY*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that functions as a negative regulator of lateral branching, presumably through its expression in axillary buds (PubMed:12581309, PubMed:20547591). Involved in the fine tuning of shoot branching. May function as an integrator of multiple signaling pathways to regulate the development of axillary buds. Works partially downstream of strigolactones to inhibit bud outgrowth (PubMed:20547591). Binds to MADS57 to suppress the negative regulation of D14 by MADS57 and balance the expression of D14 for tillering (PubMed:23463009). {ECO:0000269\|PubMed:12581309, ECO:0000269\|PubMed:20547591, ECO:0000269\|PubMed:23463009}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi1g11060.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB491559	3e-68	AB491559.1 Oryza officinalis tb1 gene for teosinte branched 1, complete cds, strain: W0002.
GenBank	DQ842222	3e-68	DQ842222.1 Phyllostachys praecox TB1-1 protein (TB1-1) mRNA, complete cds.
GenBank	DQ842223	3e-68	DQ842223.1 Phyllostachys praecox TB1-2 protein (TB1-2) mRNA, complete cds.
GenBank	DQ842225	3e-68	DQ842225.1 Sasa fortunei TB1 protein (TB1) gene, partial cds.
GenBank	DQ910763	3e-68	DQ910763.1 Yushania niitakayamensis TB1-like gene, complete cds.
GenBank	DQ910764	3e-68	DQ910764.1 Pleioblastus amarus TB1-like gene, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003559513.1	0.0	transcription factor TEOSINTE BRANCHED 1
Swissprot	Q8LN68	1e-100	TB1_ORYSJ; Transcription factor TB1
TrEMBL	I1GP36	0.0	I1GP36_BRADI; Uncharacterized protein
STRING	BRADI1G11060.1	0.0	(Brachypodium distachyon)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP7253	36	51
Representative plant	OGRP12650	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	7e-24	TCP domain protein 12

Link Out ? help Back to Top
Phytozome	Bradi1g11060.1.p
Entrez Gene	100831687

Publications ? help Back to Top
Lukens L,Doebley J Molecular evolution of the teosinte branched gene among maize and related grasses. Mol. Biol. Evol., 2001. 18(4): p. 627-38 [PMID:11264415] Takeda T, et al. The OsTB1 gene negatively regulates lateral branching in rice. Plant J., 2003. 33(3): p. 513-20 [PMID:12581309] Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764] Arite T, et al. DWARF10, an RMS1/MAX4/DAD1 ortholog, controls lateral bud outgrowth in rice. Plant J., 2007. 51(6): p. 1019-29 [PMID:17655651] Lewis JM, et al. Overexpression of the maize Teosinte Branched1 gene in wheat suppresses tiller development. Plant Cell Rep., 2008. 27(7): p. 1217-25 [PMID:18392625] Minakuchi K, et al. FINE CULM1 (FC1) works downstream of strigolactones to inhibit the outgrowth of axillary buds in rice. Plant Cell Physiol., 2010. 51(7): p. 1127-35 [PMID:20547591] Mondragón-Palomino M,Trontin C High time for a roll call: gene duplication and phylogenetic relationships of TCP-like genes in monocots. Ann. Bot., 2011. 107(9): p. 1533-44 [PMID:21444336] Xia K, et al. OsTIR1 and OsAFB2 downregulation via OsmiR393 overexpression leads to more tillers, early flowering and less tolerance to salt and drought in rice. PLoS ONE, 2012. 7(1): p. e30039 [PMID:22253868] Guo S, et al. The interaction between OsMADS57 and OsTB1 modulates rice tillering via DWARF14. Nat Commun, 2013. 4: p. 1566 [PMID:23463009] Byeon Y,Back K An increase in melatonin in transgenic rice causes pleiotropic phenotypes, including enhanced seedling growth, delayed flowering, and low grain yield. J. Pineal Res., 2014. 56(4): p. 408-14 [PMID:24571270] Yano K, et al. Isolation of a novel lodging resistance QTL gene involved in strigolactone signaling and its pyramiding with a QTL gene involved in another mechanism. Mol Plant, 2015. [PMID:25381289] Chen Z,Gao X,Zhang J Alteration of osa-miR156e expression affects rice plant architecture and strigolactones (SLs) pathway. Plant Cell Rep., 2015. 34(5): p. 767-81 [PMID:25604991] Yano K, et al. Isolation of a novel lodging resistance QTL gene involved in strigolactone signaling and its pyramiding with a QTL gene involved in another mechanism. Mol Plant, 2015. 8(2): p. 303-14 [PMID:25616386] Jung H,Lee DK,Choi YD,Kim JK OsIAA6, a member of the rice Aux/IAA gene family, is involved in drought tolerance and tiller outgrowth. Plant Sci., 2015. 236: p. 304-12 [PMID:26025543] Li S The Arabidopsis thaliana TCP transcription factors: A broadening horizon beyond development. Plant Signal Behav, 2015. 10(7): p. e1044192 [PMID:26039357] Yang X, et al. Distinct Regulatory Changes Underlying Differential Expression of TEOSINTE BRANCHED1-CYCLOIDEA-PROLIFERATING CELL FACTOR Genes Associated with Petal Variations in Zygomorphic Flowers of Petrocosmea spp. of the Family Gesneriaceae. Plant Physiol., 2015. 169(3): p. 2138-51 [PMID:26351309] De Paolo S,Gaudio L,Aceto S Analysis of the TCP genes expressed in the inflorescence of the orchid Orchis italica. Sci Rep, 2015. 5: p. 16265 [PMID:26531864] Álvarez-Salgado E,Arredondo-Peter R Effect of the synthesis of rice non-symbiotic hemoglobins 1 and 2 in the recombinant Escherichia coli TB1 growth. F1000Res, 2015. 4: p. 1053 [PMID:26973784] Li X, et al. MicroRNA393 is involved in nitrogen-promoted rice tillering through regulation of auxin signal transduction in axillary buds. Sci Rep, 2016. 6: p. 32158 [PMID:27574184]