PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g10170.4.p
Common NameBRADI_1g10170, LOC100822179
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family bHLH
Protein Properties Length: 350aa    MW: 37945.9 Da    PI: 6.2699
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g10170.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH376.1e-12166213355
                       HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       + h  +Er+RR+++ ++f  L +++P +     kK++Ka++L  A++Y+k Lq
  Bradi1g10170.4.p 166 QDHILAERKRREKLSERFIALSKIVPGL-----KKMDKASVLGDAIKYVKTLQ 213
                       67999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.834163212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-9166213IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.93E-17166225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-17167228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.15E-13168217No hitNo description
SMARTSM003531.1E-14169218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MATQWFSNMV MEEPSFFHQW QSDATLEQYT EQQIAVAFGQ AELDHATAAA ALMQQQQQQY  60
GVEQHQRPRK AAKVNTSWDS CITEQGSPAE NSSSPTILSF GAAFANNKPT QAHYGPAGPV  120
KLPKQELDAP LIQPKRSYEA AMAAAEPFPK AAAAAAPATR PASQNQDHIL AERKRREKLS  180
ERFIALSKIV PGLKKMDKAS VLGDAIKYVK TLQDQVKGME ESARLRRPVE AAVLVKKSQL  240
VPEEDDGSSS SCDENFEGAA EAGGLPEIEA RMSDRTVLVK IHCENRKGAL IAALSQVEGF  300
GLTIMNTNVL PFTASSLDIT IMATAGEDFS LSVKDIVRKL NQAFKSSSP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1171176ERKRRE
2172177RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g10170.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3675911e-153AK367591.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2059D10.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003560380.10.0transcription factor bHLH18
RefseqXP_014753815.10.0transcription factor bHLH18
RefseqXP_024313727.10.0transcription factor bHLH18
TrEMBLI1GNT80.0I1GNT8_BRADI; Uncharacterized protein
STRINGBRADI1G10170.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-50bHLH family protein