PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g09900.2.p | ||||||||
Common Name | BRADI_1g09900, LOC100833132 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | GRF | ||||||||
Protein Properties | Length: 578aa MW: 61637.7 Da PI: 6.7597 | ||||||||
Description | GRF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRC | 76.7 | 2.4e-24 | 201 | 245 | 1 | 45 |
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e Bradi1g09900.2.p 201 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKHVEG 245 79****************************************986 PP | |||||||
2 | QLQ | 61.3 | 2.6e-21 | 135 | 171 | 1 | 37 |
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yKyLaan+ vPp Ll +i++ Bradi1g09900.2.p 135 GPFTPSQWMELEHQALIYKYLAANMSVPPSLLIPIRR 171 59*********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00951 | 2.8E-13 | 135 | 171 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
Pfam | PF08880 | 3.4E-16 | 136 | 170 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51666 | 24.23 | 136 | 171 | IPR014978 | Glutamine-Leucine-Glutamine, QLQ |
PROSITE profile | PS51667 | 25.455 | 201 | 245 | IPR014977 | WRC domain |
Pfam | PF08879 | 2.0E-20 | 202 | 244 | IPR014977 | WRC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009624 | Biological Process | response to nematode | ||||
GO:0048364 | Biological Process | root development | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0061062 | Biological Process | regulation of nematode larval development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005524 | Molecular Function | ATP binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 578 aa Download sequence Send to blast |
MDLGGVLMAA VDAGVGGGEH GVLGSRVLKH GRGNAEDEQH GWRPPPAKQA RAEDDAVSEA 60 VKVAAPYLLG SCSPGHGRER MLSFSSSASS RPSAAAAAAA EGAMPLYYGT PASCSGLSSV 120 SLSASIQGAM ARVRGPFTPS QWMELEHQAL IYKYLAANMS VPPSLLIPIR RSLASLYPPA 180 YFGSSTLGWG SFQLGYTGNS DPEPGRCRRT DGKKWRCSRD AVADQKYCER HMNRGRHRSR 240 KHVEGQPGQA AKAMSATVAA AAAQPSAVAT VGEGATASLT ISHQQQPVKN YALNTIDPCS 300 LQYNSELVNK QNESEQAQDS DSLSMLTSMS ARSTGNLFPF SKQHKPFEVT TSRPDYGLVS 360 SDSLMSSPHS SLENASLLAS QSLNEHQSSL SLQHFVDWPR TPSQGALSWP DTEEIQAQRT 420 QLSISVPMAS SDLSSASTSP IHEKLMLSPL KLSREYSPIG LSITANRDEV TQGEQDWMPT 480 FHDSSMGGPL GEVLTKNSNM EARNYLSASL NLLTDAWDSS PLETSPVGVL QKTTFGSVSS 540 STGSSPRMEN HSVYDGISNL RDDLGSIVVN HPSIRLV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g09900.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003560274.1 | 0.0 | growth-regulating factor 6 | ||||
Swissprot | Q6AWY3 | 0.0 | GRF6_ORYSJ; Growth-regulating factor 6 | ||||
TrEMBL | A0A0Q3GR54 | 0.0 | A0A0Q3GR54_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G09900.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4290 | 35 | 68 | Representative plant | OGRP3357 | 12 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37740.1 | 9e-57 | growth-regulating factor 2 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g09900.2.p |
Entrez Gene | 100833132 |
Publications ? help Back to Top | |||
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