PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g09900.1.p
Common NameBRADI_1g09900, LOC100833132
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRF
Protein Properties Length: 449aa    MW: 48835.4 Da    PI: 6.8444
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g09900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC77.21.7e-2472116145
               WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                       d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e 
  Bradi1g09900.1.p  72 DPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKHVEG 116
                       79****************************************986 PP
2QLQ61.71.9e-21642137
               QLQ  1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                      ++FT++Q+++L++Q+l+yKyLaan+ vPp Ll +i++
  Bradi1g09900.1.p  6 GPFTPSQWMELEHQALIYKYLAANMSVPPSLLIPIRR 42
                      59*********************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009512.8E-13642IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.5E-16741IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166624.23742IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.45572116IPR014977WRC domain
PfamPF088791.5E-2073115IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009624Biological Processresponse to nematode
GO:0048364Biological Processroot development
GO:0048366Biological Processleaf development
GO:0061062Biological Processregulation of nematode larval development
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 449 aa     Download sequence    Send to blast
MARVRGPFTP SQWMELEHQA LIYKYLAANM SVPPSLLIPI RRSLASLYPP AYFGSSTLGW  60
GSFQLGYTGN SDPEPGRCRR TDGKKWRCSR DAVADQKYCE RHMNRGRHRS RKHVEGQPGQ  120
AAKAMSATVA AAAAQPSAVA TVGEGATASL TISHQQQPVK NYALNTIDPC SLQYNSELVN  180
KQNESEQAQD SDSLSMLTSM SARSTGNLFP FSKQHKPFEV TTSRPDYGLV SSDSLMSSPH  240
SSLENASLLA SQSLNEHQSS LSLQHFVDWP RTPSQGALSW PDTEEIQAQR TQLSISVPMA  300
SSDLSSASTS PIHEKLMLSP LKLSREYSPI GLSITANRDE VTQGEQDWMP TFHDSSMGGP  360
LGEVLTKNSN MEARNYLSAS LNLLTDAWDS SPLETSPVGV LQKTTFGSVS SSTGSSPRME  420
NHSVYDGISN LRDDLGSIVV NHPSIRLV*
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that plays a regulatory role in gibberellin-induced stem elongation. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g09900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0735781e-132AK073578.1 Oryza sativa Japonica Group cDNA clone:J033048N01, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003560274.10.0growth-regulating factor 6
SwissprotQ6AWY30.0GRF6_ORYSJ; Growth-regulating factor 6
TrEMBLA0A0Q3GR540.0A0A0Q3GR54_BRADI; Uncharacterized protein
STRINGBRADI1G09900.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37740.11e-56growth-regulating factor 2
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Liu H, et al.
    OsmiR396d-regulated OsGRFs function in floral organogenesis in rice through binding to their targets OsJMJ706 and OsCR4.
    Plant Physiol., 2014. 165(1): p. 160-74
    [PMID:24596329]
  3. Gao F, et al.
    Blocking miR396 increases rice yield by shaping inflorescence architecture.
    Nat Plants, 2015. 2: p. 15196
    [PMID:27250748]