PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bradi1g09550.2.p | ||||||||
Common Name | BRADI_1g09550, LOC100838337 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
|
||||||||
Family | GATA | ||||||||
Protein Properties | Length: 210aa MW: 23346.8 Da PI: 10.1996 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 47.7 | 2.2e-15 | 89 | 125 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nCg ++ Tp +Rrgp g+++LCnaCGl+++ kg+ Bradi1g09550.2.p 89 CRNCGISSrlTPAMRRGPAGPRSLCNACGLMWANKGT 125 **********************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF06203 | 7.0E-16 | 18 | 58 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 13.354 | 18 | 60 | IPR010402 | CCT domain |
SMART | SM00401 | 4.8E-9 | 83 | 137 | IPR000679 | Zinc finger, GATA-type |
SuperFamily | SSF57716 | 2.33E-10 | 87 | 134 | No hit | No description |
Gene3D | G3DSA:3.30.50.10 | 1.6E-13 | 87 | 127 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 3.85E-12 | 89 | 139 | No hit | No description |
Pfam | PF00320 | 3.1E-13 | 89 | 125 | IPR000679 | Zinc finger, GATA-type |
PROSITE pattern | PS00344 | 0 | 89 | 116 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 210 aa Download sequence Send to blast |
MAVPTAYGEK STTVAAKRVA SLMRFREKRK ERCFDKKIRY GVRKEVAQKM KRRKGQFAGR 60 ADLGDGACSS AVCSSQANGE DDHFLETHCR NCGISSRLTP AMRRGPAGPR SLCNACGLMW 120 ANKGTLRSPL NAPKMAVQHP PNLSKMDVLN MDYDKTILCA ENDQTTIKMD SGMSPEQVQR 180 LEPPPTDRRR QHDSFPTKDN FMTVDKHLG* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bradi1g09550.2.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003559456.1 | 1e-157 | GATA transcription factor 19 isoform X1 | ||||
Swissprot | Q0DNU1 | 1e-102 | GAT19_ORYSJ; GATA transcription factor 19 | ||||
TrEMBL | A0A0Q3JMT2 | 1e-156 | A0A0Q3JMT2_BRADI; Uncharacterized protein | ||||
TrEMBL | I1GNL7 | 1e-155 | I1GNL7_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G09550.1 | 1e-156 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G51600.2 | 2e-41 | ZIM-LIKE 2 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bradi1g09550.2.p |
Entrez Gene | 100838337 |