PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g09550.1.p | ||||||||
Common Name | BRADI_1g09550, LOC100838337 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | GATA | ||||||||
Protein Properties | Length: 285aa MW: 30953.3 Da PI: 8.4864 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 47 | 3.4e-15 | 164 | 200 | 1 | 35 |
GATA 1 CsnCgttk..TplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nCg ++ Tp +Rrgp g+++LCnaCGl+++ kg+ Bradi1g09550.1.p 164 CRNCGISSrlTPAMRRGPAGPRSLCNACGLMWANKGT 200 **********************************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00979 | 9.6E-10 | 31 | 66 | IPR010399 | Tify domain |
PROSITE profile | PS51320 | 15.151 | 31 | 66 | IPR010399 | Tify domain |
Pfam | PF06200 | 1.6E-12 | 34 | 65 | IPR010399 | Tify domain |
Pfam | PF06203 | 1.1E-15 | 93 | 133 | IPR010402 | CCT domain |
PROSITE profile | PS51017 | 13.354 | 93 | 135 | IPR010402 | CCT domain |
SMART | SM00401 | 4.8E-9 | 158 | 212 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 2.6E-13 | 162 | 202 | IPR013088 | Zinc finger, NHR/GATA-type |
SuperFamily | SSF57716 | 4.09E-10 | 162 | 209 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 164 | 191 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 4.9E-13 | 164 | 200 | IPR000679 | Zinc finger, GATA-type |
CDD | cd00202 | 5.69E-13 | 164 | 214 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 285 aa Download sequence Send to blast |
MASETAADGH DHPPAVAPGN DENAAAAEAL LSTASEQLTL VYQGEVYVFD PVPPQKVQAV 60 LLVLGGCEVP PGLVSMAVPT AYGEKSTTVA AKRVASLMRF REKRKERCFD KKIRYGVRKE 120 VAQKMKRRKG QFAGRADLGD GACSSAVCSS QANGEDDHFL ETHCRNCGIS SRLTPAMRRG 180 PAGPRSLCNA CGLMWANKGT LRSPLNAPKM AVQHPPNLSK MDVLNMDYDK TILCAENDQT 240 TIKMDSGMSP EQVQRLEPPP TDRRRQHDSF PTKDNFMTVD KHLG* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250|UniProtKB:Q8LAU9}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g09550.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA), and drought and salt stresses. Down-regulated by jasmonate and wounding. {ECO:0000269|PubMed:19618278}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK376700 | 0.0 | AK376700.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3132B09. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003559456.1 | 0.0 | GATA transcription factor 19 isoform X1 | ||||
Swissprot | Q0DNU1 | 1e-131 | GAT19_ORYSJ; GATA transcription factor 19 | ||||
TrEMBL | I1GNL7 | 0.0 | I1GNL7_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G09550.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3460 | 37 | 73 | Representative plant | OGRP831 | 16 | 61 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51600.2 | 3e-58 | ZIM-LIKE 2 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g09550.1.p |
Entrez Gene | 100838337 |