PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g08470.1.p
Common NameBRADI_1g08470, LOC100827824
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family MYB_related
Protein Properties Length: 569aa    MW: 63780.1 Da    PI: 7.5516
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g08470.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.88.1e-11109149445
                       S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       W ++E+ ll+++++++G g+W+ +a+++g ++   qc++++ 
  Bradi1g08470.1.p 109 WNADEEILLLEGIEMYGLGNWAEVAEHVG-TKGKAQCIEHYT 149
                       *****************************.9*********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0250241.1E-17737564IPR016827Transcriptional adaptor 2
SMARTSM002912.6E-104590IPR000433Zinc finger, ZZ-type
PfamPF005696.3E-104789IPR000433Zinc finger, ZZ-type
SuperFamilySSF578509.42E-1549112No hitNo description
PROSITE profilePS5013511.2854992IPR000433Zinc finger, ZZ-type
CDDcd023351.88E-254997No hitNo description
PROSITE patternPS0135705178IPR000433Zinc finger, ZZ-type
SuperFamilySSF466891.27E-11102155IPR009057Homeodomain-like
PROSITE profilePS5129321.745104156IPR017884SANT domain
SMARTSM007178.8E-10105154IPR001005SANT/Myb domain
PfamPF002491.5E-10108149IPR001005SANT/Myb domain
CDDcd001671.28E-10109150No hitNo description
Gene3DG3DSA:1.10.10.601.4E-7109151IPR009057Homeodomain-like
SuperFamilySSF466895.02E-21465557IPR009057Homeodomain-like
PROSITE profilePS509349.459477568IPR007526SWIRM domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006338Biological Processchromatin remodeling
GO:0006357Biological Processregulation of transcription from RNA polymerase II promoter
GO:0009631Biological Processcold acclimation
GO:0009733Biological Processresponse to auxin
GO:0009735Biological Processresponse to cytokinin
GO:0035066Biological Processpositive regulation of histone acetylation
GO:0042127Biological Processregulation of cell proliferation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003682Molecular Functionchromatin binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0003713Molecular Functiontranscription coactivator activity
GO:0004402Molecular Functionhistone acetyltransferase activity
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 569 aa     Download sequence    Send to blast
MGRSRGVPNP GDDDTNHRSK RRRVASSGDA TDSLSAACGG AGDGKKALYH CNYCNKDLSG  60
KIRFKCSKCP DFDLCVECFS VGAEVQPHRS NHPYRVMDNL SFPLICPDWN ADEEILLLEG  120
IEMYGLGNWA EVAEHVGTKG KAQCIEHYTT AYMNSPCYPL PDMSHVNGKN RKELLAMAKV  180
QGESKKGISV LPGDSTPKDE SPFSPSRVKV EDAPGEGPAG RSPSHIAGGA NKKASTAGHF  240
KDSANLAKME DGHMDRSIGV KKPRYSADEG PSLTELSGYN AKRHEFDPEY DNDAEQALAE  300
MEFKETDSET DRELKLRVLR IYLSRLDERK RRKEFILERN LLYPNPLEKD LTNEDKEVYH  360
RYKVFMRFLS KEEHEALVRS VIEERKIRRR IQELQECRSA GCRTLAEAKI HIEQKRRKEY  420
EANAHKAKES GQLIPTTKVV HKTNRPMKLE SDGNLDPKKS NATVDSGGRD SPKATGHTVA  480
KQWDDWDIVG LPGAELLSAS EKLLCCQNRL LPSHYLRMQE VLMQEMFKGS VVKREDAHVL  540
FKVDPAKVDT VYDMVMKKLG SNEEAPTV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6cw2_C5e-39491645120Transcriptional adapter 2
6cw3_E5e-39491645120Transcriptional adapter 2
6cw3_G5e-39491645120Transcriptional adapter 2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
11923KRRRV
2328333RKRRKE
Functional Description ? help Back to Top
Source Description
UniProtRequired for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g08470.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3662460.0AK366246.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2041G24.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559501.10.0transcriptional adapter ADA2
SwissprotQ75LL60.0TADA2_ORYSJ; Transcriptional adapter ADA2
TrEMBLI1GN910.0I1GN91_BRADI; Transcriptional adapter
STRINGBRADI1G08470.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP77083847
Representative plantOGRP2480912
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]