PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g07660.1.p
Common NameLOC100835463
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 270aa    MW: 27946.5 Da    PI: 8.8496
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g07660.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.40.0009790112123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       +kC+ Cg+sF +   L  H  +H
  Bradi1g07660.1.p  90 FKCSVCGRSFGSYQALGGHKTSH 112
                       89********9998888887776 PP
2zf-C2H212.50.00045162184123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C++C+k F++   L  H r+H
  Bradi1g07660.1.p 162 HRCSICHKEFPTGQALGGHKRKH 184
                       79*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015712.13390117IPR007087Zinc finger, C2H2
SMARTSM003550.0290112IPR015880Zinc finger, C2H2-like
SuperFamilySSF576676.26E-990112No hitNo description
PfamPF139122.9E-1290113IPR007087Zinc finger, C2H2
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
SuperFamilySSF576676.26E-9157184No hitNo description
PfamPF139121.3E-12161186IPR007087Zinc finger, C2H2
SMARTSM003550.043162184IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.058162184IPR007087Zinc finger, C2H2
PROSITE patternPS000280164184IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MSSMAREALQ AVIHKEEEAV AVAATSSSEE SGAHGGVLQG WAKRKRSRPR QRSEEENLAL  60
CLLMLSRGGG QHRAPQPSSS SPVTLTAAEF KCSVCGRSFG SYQALGGHKT SHRVKQPSPP  120
PPPPTAPVLV APAPAAIPTT PAEPATSSTD AAGAPATSNR VHRCSICHKE FPTGQALGGH  180
KRKHYDGVIG SAAAAASSTE LLATAAAAES EVGSTGTGAA ARAFDLNIPA VPEFVWRPCL  240
KGSSGKMMWE DDEEVQSPLA FKKPRLLTA*
Functional Description ? help Back to Top
Source Description
UniProtPotential transcription factor which binds the nonamer motif 5'-CATCCAACG-3'. Possibly involved in regulating transcription of the histone H3 and H4 genes. {ECO:0000269|PubMed:8223628}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00399DAPTransfer from AT3G49930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g07660.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559010.11e-169zinc finger protein 1
SwissprotQ424301e-96ZFP1_WHEAT; Zinc finger protein 1
TrEMBLA0A0Q3JLT70.0A0A0Q3JLT7_BRADI; Uncharacterized protein
STRINGBRADI1G07660.11e-169(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP102236113
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49930.12e-32C2H2 family protein