PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g07492.1.p
Common NameBRADI_1g07492
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 576aa    MW: 59461.1 Da    PI: 8.6542
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g07492.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.20.0002680101223
                       EETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                        Cp C+k+F++   +  H+r+H
  Bradi1g07492.1.p  80 ICPECDKVFPSDKAMYGHLRSH 101
                       6*******************99 PP
2zf-C2H2157e-05385407123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++Cp C+k F++   L  H+ +H
  Bradi1g07492.1.p 385 FVCPRCDKQFPTYQALGGHMASH 407
                       89******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.6E-779101No hitNo description
PROSITE profilePS501579.20379101IPR007087Zinc finger, C2H2
SMARTSM003550.004879101IPR015880Zinc finger, C2H2-like
PfamPF139121.4E-680103IPR007087Zinc finger, C2H2
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
SuperFamilySSF576671.6E-7380407No hitNo description
PfamPF139123.2E-11385408IPR007087Zinc finger, C2H2
PROSITE profilePS501579.66385412IPR007087Zinc finger, C2H2
SMARTSM003550.005385407IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280387407IPR007087Zinc finger, C2H2
PfamPF139124.5E-10492516IPR007087Zinc finger, C2H2
SMARTSM003550.37493515IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.141493515IPR007087Zinc finger, C2H2
PROSITE patternPS000280495515IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MDARAYYLQA AEAAATVTTQ AAARATAGGE VAARTFYFQA RQGRAAGDDA PPPPPRHGQS  60
LSIINGGGAA AEGADLRDLI CPECDKVFPS DKAMYGHLRS HPEKGYKGAT RPAPNPTAGS  120
VAGAGDAKKR RRKVARRKNR AAASGLSIKW PVTAKRGRLP LAPTAGAGSA ASSSSSVSTA  180
VLESSFSFCS QEVEAAMILL QLSGFRGGGG EPEEELPVAV SQSQIVLQAA DQLELVPADH  240
VQNVAMLDAP EVEKQPVMPD HVSVSDAGAW LPMMPGHGSA GAALWEADKS VPPVAVEHMF  300
GIITESSASL AAAIEQAKVA AASSPEARDK KLGKLVVSDA KKPMKKRRLL HDIEIQAAHS  360
SEPAEAADAM TRARRIPSPA SDRSFVCPRC DKQFPTYQAL GGHMASHNRA NKYGPDGQQH  420
RQLVAQLAVQ SLMASQGGAN AIPRANAAIA SGNTATTGGT NAAAADASSG LGLQIILPPP  480
PTAPIRLAPP AAYQCSRCEL VFRTGQALGG HKRRHWIADK VRAEADATRA AIVAAAAEAV  540
AAATPAVAAE AAVSAPAAPR GDPRDFDLNE MPSEE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127132KKRRRK
2328334DKKLGKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g07492.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024311827.11e-100uncharacterized protein LOC112269383
TrEMBLA0A0Q3JLR10.0A0A0Q3JLR1_BRADI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP144001425
Representative plantOGRP1097248