PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g07290.2.p | ||||||||
Common Name | BRADI_1g07290 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | AP2 | ||||||||
Protein Properties | Length: 551aa MW: 58666.9 Da PI: 6.8615 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 46.7 | 8.1e-15 | 298 | 358 | 1 | 55 |
AP2 1 sgykGV.rwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 s+++GV ++++++gr++A+++d ++ g ++ ++++lg ++ +e+Aa+a++ a++k++g Bradi1g07290.2.p 298 SKFRGVtSRHRWTGRYEAHLWDnTCTkEGqtRKgRQVYLGGYDMEEKAARAYDLAALKYWG 358 79*****9**************888886678446*************************98 PP | |||||||
2 | AP2 | 48.6 | 2.1e-15 | 401 | 452 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s y+GV+++++ grW A+I +s +k +lg+f t eeAa+a++ a+ k++g Bradi1g07290.2.p 401 SIYRGVTRHHQHGRWQARIGRVSG---NKDLYLGTFTTQEEAAEAYDVAAIKFRG 452 57****************999754...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 2.16E-14 | 298 | 367 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 4.3E-11 | 298 | 358 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 5.19E-17 | 298 | 367 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 4.5E-15 | 299 | 367 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.703 | 299 | 366 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-25 | 299 | 372 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.14E-22 | 401 | 462 | No hit | No description |
SuperFamily | SSF54171 | 9.15E-18 | 401 | 461 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.6E-10 | 401 | 452 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.8E-18 | 402 | 460 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.19 | 402 | 460 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 4.7E-33 | 402 | 466 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007276 | Biological Process | gamete generation | ||||
GO:0010492 | Biological Process | maintenance of shoot apical meristem identity | ||||
GO:0042127 | Biological Process | regulation of cell proliferation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 551 aa Download sequence Send to blast |
MTNSGSAGVV RSMSGNGIVD GGSWLGFSMS PHAAAPMAAG SAIDIGGQHV QHQGGFYYPP 60 ATVTSSPASY YLGGAGNVAA AANGGYNYYS GVSSMPLKSD GSLCIMEALH RNEQEHQAGA 120 MGSASASPKL ENFLGAGPAM ALSLDSSSYY YAGRGHALDR GAGAGTHQVQ YAIIPGASAG 180 HDVYYDAHAH AAMMDEQAAM AAAGWMARGE EGGYDHGGNG AEDGALVPVD IGNQVHPLAL 240 SISSGSQASC VTMQASAYAG EEFLAVGAAV ASKKRGAGQN KQAVQHRKSI DTFGQRTSKF 300 RGVTSRHRWT GRYEAHLWDN TCTKEGQTRK GRQVYLGGYD MEEKAARAYD LAALKYWGPA 360 THINFPVEDY QEELEEMKKM TRQEFVAHLR RKSSGFSRGA SIYRGVTRHH QHGRWQARIG 420 RVSGNKDLYL GTFTTQEEAA EAYDVAAIKF RGLNAVTNFE ITRYDVEKIM QSSTLLPGDE 480 ARRKSKNAES GGALVANDDA ADWRTATPCE AFYALQDIVS VDDEARVSCA GRGRARVERV 540 VAGDEPEQLT * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that recognizes and binds to the DNA consensus sequence 5'-CAC[AG]N[AT]TNCCNANG-3'. Required for the initiation and growth of ovules integumenta, and for the development of female gametophyte. Plays a critical role in the development of gynoecium marginal tissues (e.g. stigma, style and septa), and in the fusion of carpels and of medial ridges leading to ovule primordia. Also involved in organs initiation and development, including floral organs. Maintains the meristematic competence of cells and consequently sustains expression of cell cycle regulators during organogenesis, thus controlling the final size of each organ by controlling their cell number. Regulates INO autoinduction and expression pattern. As ANT promotes petal cell identity and mediates down-regulation of AG in flower whorl 2, it functions as a class A homeotic gene. {ECO:0000269|PubMed:10528263, ECO:0000269|PubMed:10639184, ECO:0000269|PubMed:10948255, ECO:0000269|PubMed:11041883, ECO:0000269|PubMed:12183381, ECO:0000269|PubMed:12271029, ECO:0000269|PubMed:12655002, ECO:0000269|PubMed:8742706, ECO:0000269|PubMed:8742707, ECO:0000269|PubMed:9001406, ECO:0000269|PubMed:9093862, ECO:0000269|PubMed:9118807}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00088 | SELEX | Transfer from AT4G37750 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g07290.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK375318 | 1e-178 | AK375318.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv3090N20. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014757457.2 | 0.0 | LOW QUALITY PROTEIN: AP2-like ethylene-responsive transcription factor ANT | ||||
Swissprot | Q38914 | 1e-136 | ANT_ARATH; AP2-like ethylene-responsive transcription factor ANT | ||||
TrEMBL | A0A2K2DIG3 | 0.0 | A0A2K2DIG3_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G07290.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP948 | 38 | 133 | Representative plant | OGRP112 | 17 | 209 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37750.1 | 1e-126 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g07290.2.p |