PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g06907.7.p | ||||||||
Common Name | BRADI_1g06907 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | FAR1 | ||||||||
Protein Properties | Length: 1143aa MW: 128969 Da PI: 6.5806 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 21.7 | 6.6e-07 | 55 | 90 | 59 | 90 |
FAR1 59 rtgCkaklkvkkek....dgkwevtkleleHnHela 90 C+a+++v k++ gkw+v+kl+ +HnHel Bradi1g06907.7.p 55 GERCRAMMEVVKKDavgvGGKWKVSKLVVDHNHELE 90 568*****99888878889***************95 PP | |||||||
2 | FAR1 | 23 | 2.7e-07 | 117 | 162 | 2 | 47 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk 47 fY+ Y++++GF+ r+ ++++s +g +++++f C + + ++++k+ Bradi1g06907.7.p 117 FYQGYGEKAGFKARTGSNRRSVGTGAMIMQRFLCCRGNYVNRKSKA 162 9**********************************99888887776 PP | |||||||
3 | FAR1 | 77.2 | 3.3e-24 | 397 | 483 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +YA ++GF+vrk s k+ n+ + +r +vCskeg+r ++ ++ +++++r+ rtgC+a++++k +++gk++vt+ + +HnH+l Bradi1g06907.7.p 397 EFYVSYAGSAGFNVRKGCSDKT-ANNVMRSRAYVCSKEGFRLKSVTA--EQKKPRPDARTGCQAHMTIKITTSGKYVVTEYVADHNHDLE 483 6*****************9999.6667****************9988..999************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.1E-4 | 117 | 167 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF03101 | 1.1E-21 | 397 | 483 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.3E-23 | 583 | 676 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.002 | 851 | 898 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 3.1E-5 | 853 | 895 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 6.8E-6 | 873 | 900 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1143 aa Download sequence Send to blast |
MAGAAPPSGP PDPPPLEPEE PLSREYLSLR QAGEASEEEE EASRSPPPPA GAPGGERCRA 60 MMEVVKKDAV GVGGKWKVSK LVVDHNHELE VAPVEGGGAG VPVLGMEFDS ADDAKGFYQG 120 YGEKAGFKAR TGSNRRSVGT GAMIMQRFLC CRGNYVNRKS KAAKGLEEVE EGAAEKGKGE 180 VGPCKKRGRK PGKKNAQAPE VEMGGGIACT EIVQAVPSRR SSRRGRDEND VVRMAVENVI 240 EPEERNDEAV DGARNGSAGA NDEEEEDEME EEVGTKEKRG RGRPRKAVTE GNALQACDLG 300 ASASQCNNDD RKKILDKYLS KRQTRPVSGR PAKPSRQLSE RRSKRLEKQN LKEEEKPESK 360 KDEITEAEAD PETEVVAGPG GEPKIGMVFV NEDKAYEFYV SYAGSAGFNV RKGCSDKTAN 420 NVMRSRAYVC SKEGFRLKSV TAEQKKPRPD ARTGCQAHMT IKITTSGKYV VTEYVADHNH 480 DLETPLVDIQ ILRSQKLLAK LQQPLDLPKV VLIPNDYKNY IRTRSTKDMP LGDAQAICEY 540 LQRMKGKNPS FFYSIQVDED DQIRNVFWSD IKSMMDYNYF GDVLYVDTRY STGHYGRPLL 600 LFIGVNHHKQ PTIFGTAFIY DESVESFKWL FETFKSAMSG KQPKTVLTDH SPTISDAVAS 660 AWPGTTHRFS LLHLYQDATK ILRDTFQGSE TFAHDFSRSL YNYEEEEDFL SNWEIITGKY 720 NLKDNEWVSK FFENRERWAL PFGRDTFCAD IEATLQCDNT EAILADILKA EIDLPYFFNS 780 YNKFLEDKRL AERQADYLGV QMTQRVAPLR LLWQAANTYT PALFEMFRLE YELIVACMIY 840 SCGEIGSISE YEVTVKNRPR VHLVRFDSSE YKVICSCKKF EFVGILCCHI LKVLEIRNVK 900 ELPPHYILKR WRKDAQTEPP GFAAVDEDPK FSVSKRYNSL CRTLYKIAAK AAENTEAHTF 960 MENQYDQLLE QVELILQEKL HDKSSLSTIM KNHQQNLIQN DASNSEPRRA SAKKRKNVEM 1020 RRRQQSPLES SKKQKGRQDL LEPEECEVPL RNEPSTIPND IPNHLTTPTN QFLSPSHIMQ 1080 MQEPSHVHLQ QPHLQQSHFL SGPQIHQAPP PDIQSLQFLS SNPQLGHQTT DSQYTIPVWD 1140 FL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 277 | 285 | KRGRGRPRK |
2 | 1006 | 1015 | PRRASAKKRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g06907.7.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010229050.1 | 0.0 | protein FAR1-RELATED SEQUENCE 12 isoform X5 | ||||
TrEMBL | A0A2K2DIE3 | 0.0 | A0A2K2DIE3_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G06907.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-106 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g06907.7.p |