PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g06907.6.p
Common NameBRADI_1g06907
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family FAR1
Protein Properties Length: 868aa    MW: 96414.3 Da    PI: 7.3786
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g06907.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR122.24.7e-0755905990
              FAR1 59 rtgCkaklkvkkek....dgkwevtkleleHnHela 90
                         C+a+++v k++     gkw+v+kl+ +HnHel 
  Bradi1g06907.6.p 55 GERCRAMMEVVKKDavgvGGKWKVSKLVVDHNHELE 90
                      568*****99888878889***************95 PP
2FAR123.61.6e-07117162247
              FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk 47 
                       fY+ Y++++GF+ r+ ++++s  +g +++++f C +  + ++++k+
  Bradi1g06907.6.p 117 FYQGYGEKAGFKARTGSNRRSVGTGAMIMQRFLCCRGNYVNRKSKA 162
                       9**********************************99888887776 PP
3FAR177.72.3e-24423509190
              FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                       +fY +YA ++GF+vrk  s k+  n+ + +r +vCskeg+r ++ ++  +++++r+  rtgC+a++++k +++gk++vt+ + +HnH+l 
  Bradi1g06907.6.p 423 EFYVSYAGSAGFNVRKGCSDKT-ANNVMRSRAYVCSKEGFRLKSVTA--EQKKPRPDARTGCQAHMTIKITTSGKYVVTEYVADHNHDLE 509
                       6*****************9999.6667****************9988..999************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.3E-5117167IPR004330FAR1 DNA binding domain
PfamPF031017.3E-22423509IPR004330FAR1 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 868 aa     Download sequence    Send to blast
MAGAAPPSGP PDPPPLEPEE PLSREYLSLR QAGEASEEEE EASRSPPPPA GAPGGERCRA  60
MMEVVKKDAV GVGGKWKVSK LVVDHNHELE VAPVEGGGAG VPVLGMEFDS ADDAKGFYQG  120
YGEKAGFKAR TGSNRRSVGT GAMIMQRFLC CRGNYVNRKS KAAKGLEEVE EGAAEKGKGE  180
VGPCKKRGRK PGKKNAQAPE VEMGGGIACT EIVQAVPSRR SSRRGRDEND VVRMAVENVI  240
EPEERNDEAV DGARNGSAGA NDEEEEDEME EEVGTKEKRG RGRPRKAVTE GNALQACDLG  300
ASASQCNNDD RKKILDKYLS KRQTRPVSGR PAKIVSRQAL AERRKRGVGG RFLASEGLPP  360
SRQLSERRSK RLEKQNLKEE EKPESKKDEI TEAEADPETE VVAGPGGEPK IGMVFVNEDK  420
AYEFYVSYAG SAGFNVRKGC SDKTANNVMR SRAYVCSKEG FRLKSVTAEQ KKPRPDARTG  480
CQAHMTIKIT TSGKYVVTEY VADHNHDLET PLVDIQILRS QKLLAKLQQP LDLPKVVLIP  540
NDYKNYIRTR STKDMPLGDA QAICEYLQRM KGKNPSFFYS IQVDEDDQIR NVFWSDIKSM  600
MDYNYFGDVL YVDTRYSTGH YGFAAVDEDP KFSVSKRYNS LCRTLYKIAA KAAENTEAHT  660
FMENQYDQLL EQVELILQEK LHDKSSLSTI MKNHQQNLIQ NDASNSEPRR ASAKKRKNVE  720
MRRRQQSPLE SSKKQKGRQD LLEPEECEVP LRNEPSTIPN DIPNHLTTPT NQFLSPSHIM  780
QVPYVTQQFG LNSLQGFPGI SPFGQMQEPS HVHLQQPHLQ QSHFLSGPQI HQAPPPDIQS  840
LQFLSSNPQL GHQTTDSQYT IPVWDFL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1277285KRGRGRPRK
2707716PRRASAKKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g06907.6.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010229043.10.0protein FAR1-RELATED SEQUENCE 12 isoform X3
RefseqXP_010229047.10.0protein FAR1-RELATED SEQUENCE 5 isoform X4
TrEMBLA0A0Q3N8C90.0A0A0Q3N8C9_BRADI; Uncharacterized protein
STRINGBRADI1G06907.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.12e-34FAR1-related sequence 5