PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi1g06907.5.p

Common Name

BRADI_1g06907, LOC100839033

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

FAR1

Protein Properties

Length: 1167aa MW: 131533 Da PI: 6.5806

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi1g06907.5.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	21.7	6.7e-07	55	90	59	90
FAR1 59 rtgCkaklkvkkek....dgkwevtkleleHnHela 90 C+a+++v k++ gkw+v+kl+ +HnHel Bradi1g06907.5.p 55 GERCRAMMEVVKKDavgvGGKWKVSKLVVDHNHELE 90 568***99888878889*************95 PP
2	FAR1	22.9	2.7e-07	117	162	2	47
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk 47 fY+ Y++++GF+ r+ ++++s +g +++++f C + + ++++k+ Bradi1g06907.5.p 117 FYQGYGEKAGFKARTGSNRRSVGTGAMIMQRFLCCRGNYVNRKSKA 162 9**********************************99888887776 PP
3	FAR1	77.1	3.3e-24	397	483	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +YA ++GF+vrk s k+ n+ + +r +vCskeg+r ++ ++ +++++r+ rtgC+a++++k +++gk++vt+ + +HnH+l Bradi1g06907.5.p 397 EFYVSYAGSAGFNVRKGCSDKT-ANNVMRSRAYVCSKEGFRLKSVTA--EQKKPRPDARTGCQAHMTIKITTSGKYVVTEYVADHNHDLE 483 6***************9999.6667************9988..999**********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-4	117	167	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.1E-21	397	483	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.4E-23	583	676	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.002	851	898	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.2E-5	853	895	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.8E-6	873	900	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1167 aa Download sequence Send to blast
MAGAAPPSGP PDPPPLEPEE PLSREYLSLR QAGEASEEEE EASRSPPPPA GAPGGERCRA 60 MMEVVKKDAV GVGGKWKVSK LVVDHNHELE VAPVEGGGAG VPVLGMEFDS ADDAKGFYQG 120 YGEKAGFKAR TGSNRRSVGT GAMIMQRFLC CRGNYVNRKS KAAKGLEEVE EGAAEKGKGE 180 VGPCKKRGRK PGKKNAQAPE VEMGGGIACT EIVQAVPSRR SSRRGRDEND VVRMAVENVI 240 EPEERNDEAV DGARNGSAGA NDEEEEDEME EEVGTKEKRG RGRPRKAVTE GNALQACDLG 300 ASASQCNNDD RKKILDKYLS KRQTRPVSGR PAKPSRQLSE RRSKRLEKQN LKEEEKPESK 360 KDEITEAEAD PETEVVAGPG GEPKIGMVFV NEDKAYEFYV SYAGSAGFNV RKGCSDKTAN 420 NVMRSRAYVC SKEGFRLKSV TAEQKKPRPD ARTGCQAHMT IKITTSGKYV VTEYVADHNH 480 DLETPLVDIQ ILRSQKLLAK LQQPLDLPKV VLIPNDYKNY IRTRSTKDMP LGDAQAICEY 540 LQRMKGKNPS FFYSIQVDED DQIRNVFWSD IKSMMDYNYF GDVLYVDTRY STGHYGRPLL 600 LFIGVNHHKQ PTIFGTAFIY DESVESFKWL FETFKSAMSG KQPKTVLTDH SPTISDAVAS 660 AWPGTTHRFS LLHLYQDATK ILRDTFQGSE TFAHDFSRSL YNYEEEEDFL SNWEIITGKY 720 NLKDNEWVSK FFENRERWAL PFGRDTFCAD IEATLQCDNT EAILADILKA EIDLPYFFNS 780 YNKFLEDKRL AERQADYLGV QMTQRVAPLR LLWQAANTYT PALFEMFRLE YELIVACMIY 840 SCGEIGSISE YEVTVKNRPR VHLVRFDSSE YKVICSCKKF EFVGILCCHI LKVLEIRNVK 900 ELPPHYILKR WRKDAQTEPP GFAAVDEDPK FSVSKRYNSL CRTLYKIAAK AAENTEAHTF 960 MENQYDQLLE QVELILQEKL HDKSSLSTIM KNHQQNLIQN DASNSEPRRA SAKKRKNVEM 1020 RRRQQSPLES SKKQKGRQDL LEPEECEVPL RNEPSTIPND IPNHLTTPTN QFLSPSHIMQ 1080 VPYVTQQFGL NSLQGFPGIS PFGQMQEPSH VHLQQPHLQQ SHFLSGPQIH QAPPPDIQSL 1140 QFLSSNPQLG HQTTDSQYTI PVWDFL*

Sequence ? help Back to Top

Protein Sequence Length: 1167 aa Download sequence Send to blast

MAGAAPPSGP PDPPPLEPEE PLSREYLSLR QAGEASEEEE EASRSPPPPA GAPGGERCRA  60
MMEVVKKDAV GVGGKWKVSK LVVDHNHELE VAPVEGGGAG VPVLGMEFDS ADDAKGFYQG  120
YGEKAGFKAR TGSNRRSVGT GAMIMQRFLC CRGNYVNRKS KAAKGLEEVE EGAAEKGKGE  180
VGPCKKRGRK PGKKNAQAPE VEMGGGIACT EIVQAVPSRR SSRRGRDEND VVRMAVENVI  240
EPEERNDEAV DGARNGSAGA NDEEEEDEME EEVGTKEKRG RGRPRKAVTE GNALQACDLG  300
ASASQCNNDD RKKILDKYLS KRQTRPVSGR PAKPSRQLSE RRSKRLEKQN LKEEEKPESK  360
KDEITEAEAD PETEVVAGPG GEPKIGMVFV NEDKAYEFYV SYAGSAGFNV RKGCSDKTAN  420
NVMRSRAYVC SKEGFRLKSV TAEQKKPRPD ARTGCQAHMT IKITTSGKYV VTEYVADHNH  480
DLETPLVDIQ ILRSQKLLAK LQQPLDLPKV VLIPNDYKNY IRTRSTKDMP LGDAQAICEY  540
LQRMKGKNPS FFYSIQVDED DQIRNVFWSD IKSMMDYNYF GDVLYVDTRY STGHYGRPLL  600
LFIGVNHHKQ PTIFGTAFIY DESVESFKWL FETFKSAMSG KQPKTVLTDH SPTISDAVAS  660
AWPGTTHRFS LLHLYQDATK ILRDTFQGSE TFAHDFSRSL YNYEEEEDFL SNWEIITGKY  720
NLKDNEWVSK FFENRERWAL PFGRDTFCAD IEATLQCDNT EAILADILKA EIDLPYFFNS  780
YNKFLEDKRL AERQADYLGV QMTQRVAPLR LLWQAANTYT PALFEMFRLE YELIVACMIY  840
SCGEIGSISE YEVTVKNRPR VHLVRFDSSE YKVICSCKKF EFVGILCCHI LKVLEIRNVK  900
ELPPHYILKR WRKDAQTEPP GFAAVDEDPK FSVSKRYNSL CRTLYKIAAK AAENTEAHTF  960
MENQYDQLLE QVELILQEKL HDKSSLSTIM KNHQQNLIQN DASNSEPRRA SAKKRKNVEM  1020
RRRQQSPLES SKKQKGRQDL LEPEECEVPL RNEPSTIPND IPNHLTTPTN QFLSPSHIMQ  1080
VPYVTQQFGL NSLQGFPGIS PFGQMQEPSH VHLQQPHLQQ SHFLSGPQIH QAPPPDIQSL  1140
QFLSSNPQLG HQTTDSQYTI PVWDFL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	277	285	KRGRGRPRK
2	1006	1015	PRRASAKKRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi1g06907.5.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010229050.1	0.0	protein FAR1-RELATED SEQUENCE 12 isoform X5
TrEMBL	A0A0Q3JLD8	0.0	A0A0Q3JLD8_BRADI; Uncharacterized protein
STRING	BRADI1G06907.1	0.0	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-106	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Bradi1g06907.5.p
Entrez Gene	100839033