PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bradi1g06907.4.p

Common Name

BRADI_1g06907

Organism

Brachypodium distachyon

Taxonomic ID

15368

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium

Family

FAR1

Protein Properties

Length: 1169aa MW: 131776 Da PI: 6.835

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bradi1g06907.4.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	21.7	6.7e-07	55	90	59	90
FAR1 59 rtgCkaklkvkkek....dgkwevtkleleHnHela 90 C+a+++v k++ gkw+v+kl+ +HnHel Bradi1g06907.4.p 55 GERCRAMMEVVKKDavgvGGKWKVSKLVVDHNHELE 90 568***99888878889*************95 PP
2	FAR1	22.9	2.8e-07	117	162	2	47
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk 47 fY+ Y++++GF+ r+ ++++s +g +++++f C + + ++++k+ Bradi1g06907.4.p 117 FYQGYGEKAGFKARTGSNRRSVGTGAMIMQRFLCCRGNYVNRKSKA 162 9**********************************99888887776 PP
3	FAR1	77.1	3.4e-24	423	509	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +YA ++GF+vrk s k+ n+ + +r +vCskeg+r ++ ++ +++++r+ rtgC+a++++k +++gk++vt+ + +HnH+l Bradi1g06907.4.p 423 EFYVSYAGSAGFNVRKGCSDKT-ANNVMRSRAYVCSKEGFRLKSVTA--EQKKPRPDARTGCQAHMTIKITTSGKYVVTEYVADHNHDLE 509 6***************9999.6667************9988..999**********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-4	117	167	IPR004330	FAR1 DNA binding domain
Pfam	PF03101	1.1E-21	423	509	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.4E-23	609	702	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.002	877	924	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	3.2E-5	879	921	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.8E-6	899	926	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1169 aa Download sequence Send to blast
MAGAAPPSGP PDPPPLEPEE PLSREYLSLR QAGEASEEEE EASRSPPPPA GAPGGERCRA 60 MMEVVKKDAV GVGGKWKVSK LVVDHNHELE VAPVEGGGAG VPVLGMEFDS ADDAKGFYQG 120 YGEKAGFKAR TGSNRRSVGT GAMIMQRFLC CRGNYVNRKS KAAKGLEEVE EGAAEKGKGE 180 VGPCKKRGRK PGKKNAQAPE VEMGGGIACT EIVQAVPSRR SSRRGRDEND VVRMAVENVI 240 EPEERNDEAV DGARNGSAGA NDEEEEDEME EEVGTKEKRG RGRPRKAVTE GNALQACDLG 300 ASASQCNNDD RKKILDKYLS KRQTRPVSGR PAKIVSRQAL AERRKRGVGG RFLASEGLPP 360 SRQLSERRSK RLEKQNLKEE EKPESKKDEI TEAEADPETE VVAGPGGEPK IGMVFVNEDK 420 AYEFYVSYAG SAGFNVRKGC SDKTANNVMR SRAYVCSKEG FRLKSVTAEQ KKPRPDARTG 480 CQAHMTIKIT TSGKYVVTEY VADHNHDLET PLVDIQILRS QKLLAKLQQP LDLPKVVLIP 540 NDYKNYIRTR STKDMPLGDA QAICEYLQRM KGKNPSFFYS IQVDEDDQIR NVFWSDIKSM 600 MDYNYFGDVL YVDTRYSTGH YGRPLLLFIG VNHHKQPTIF GTAFIYDESV ESFKWLFETF 660 KSAMSGKQPK TVLTDHSPTI SDAVASAWPG TTHRFSLLHL YQDATKILRD TFQGSETFAH 720 DFSRSLYNYE EEEDFLSNWE IITGKYNLKD NEWVSKFFEN RERWALPFGR DTFCADIEAT 780 LQCDNTEAIL ADILKAEIDL PYFFNSYNKF LEDKRLAERQ ADYLGVQMTQ RVAPLRLLWQ 840 AANTYTPALF EMFRLEYELI VACMIYSCGE IGSISEYEVT VKNRPRVHLV RFDSSEYKVI 900 CSCKKFEFVG ILCCHILKVL EIRNVKELPP HYILKRWRKD AQTEPPGFAA VDEDPKFSVS 960 KRYNSLCRTL YKIAAKAAEN TEAHTFMENQ YDQLLEQVEL ILQEKLHDKS SLSTIMKNHQ 1020 QNLIQNDASN SEPRRASAKK RKNVEMRRRQ QSPLESSKKQ KGRQDLLEPE ECEVPLRNEP 1080 STIPNDIPNH LTTPTNQFLS PSHIMQMQEP SHVHLQQPHL QQSHFLSGPQ IHQAPPPDIQ 1140 SLQFLSSNPQ LGHQTTDSQY TIPVWDFL*

Sequence ? help Back to Top

Protein Sequence Length: 1169 aa Download sequence Send to blast

MAGAAPPSGP PDPPPLEPEE PLSREYLSLR QAGEASEEEE EASRSPPPPA GAPGGERCRA  60
MMEVVKKDAV GVGGKWKVSK LVVDHNHELE VAPVEGGGAG VPVLGMEFDS ADDAKGFYQG  120
YGEKAGFKAR TGSNRRSVGT GAMIMQRFLC CRGNYVNRKS KAAKGLEEVE EGAAEKGKGE  180
VGPCKKRGRK PGKKNAQAPE VEMGGGIACT EIVQAVPSRR SSRRGRDEND VVRMAVENVI  240
EPEERNDEAV DGARNGSAGA NDEEEEDEME EEVGTKEKRG RGRPRKAVTE GNALQACDLG  300
ASASQCNNDD RKKILDKYLS KRQTRPVSGR PAKIVSRQAL AERRKRGVGG RFLASEGLPP  360
SRQLSERRSK RLEKQNLKEE EKPESKKDEI TEAEADPETE VVAGPGGEPK IGMVFVNEDK  420
AYEFYVSYAG SAGFNVRKGC SDKTANNVMR SRAYVCSKEG FRLKSVTAEQ KKPRPDARTG  480
CQAHMTIKIT TSGKYVVTEY VADHNHDLET PLVDIQILRS QKLLAKLQQP LDLPKVVLIP  540
NDYKNYIRTR STKDMPLGDA QAICEYLQRM KGKNPSFFYS IQVDEDDQIR NVFWSDIKSM  600
MDYNYFGDVL YVDTRYSTGH YGRPLLLFIG VNHHKQPTIF GTAFIYDESV ESFKWLFETF  660
KSAMSGKQPK TVLTDHSPTI SDAVASAWPG TTHRFSLLHL YQDATKILRD TFQGSETFAH  720
DFSRSLYNYE EEEDFLSNWE IITGKYNLKD NEWVSKFFEN RERWALPFGR DTFCADIEAT  780
LQCDNTEAIL ADILKAEIDL PYFFNSYNKF LEDKRLAERQ ADYLGVQMTQ RVAPLRLLWQ  840
AANTYTPALF EMFRLEYELI VACMIYSCGE IGSISEYEVT VKNRPRVHLV RFDSSEYKVI  900
CSCKKFEFVG ILCCHILKVL EIRNVKELPP HYILKRWRKD AQTEPPGFAA VDEDPKFSVS  960
KRYNSLCRTL YKIAAKAAEN TEAHTFMENQ YDQLLEQVEL ILQEKLHDKS SLSTIMKNHQ  1020
QNLIQNDASN SEPRRASAKK RKNVEMRRRQ QSPLESSKKQ KGRQDLLEPE ECEVPLRNEP  1080
STIPNDIPNH LTTPTNQFLS PSHIMQMQEP SHVHLQQPHL QQSHFLSGPQ IHQAPPPDIQ  1140
SLQFLSSNPQ LGHQTTDSQY TIPVWDFL*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	277	285	KRGRGRPRK
2	1032	1041	PRRASAKKRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bradi1g06907.4.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003558513.1	0.0	protein FAR1-RELATED SEQUENCE 12 isoform X1
TrEMBL	A0A0Q3J4M9	0.0	A0A0Q3J4M9_BRADI; Uncharacterized protein
STRING	BRADI1G06907.1	0.0	(Brachypodium distachyon)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-106	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Bradi1g06907.4.p