PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g06907.3.p | ||||||||
Common Name | BRADI_1g06907 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | FAR1 | ||||||||
Protein Properties | Length: 1155aa MW: 130228 Da PI: 7.1154 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 21.7 | 6.6e-07 | 55 | 90 | 59 | 90 |
FAR1 59 rtgCkaklkvkkek....dgkwevtkleleHnHela 90 C+a+++v k++ gkw+v+kl+ +HnHel Bradi1g06907.3.p 55 GERCRAMMEVVKKDavgvGGKWKVSKLVVDHNHELE 90 568*****99888878889***************95 PP | |||||||
2 | FAR1 | 22.9 | 2.7e-07 | 117 | 162 | 2 | 47 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk 47 fY+ Y++++GF+ r+ ++++s +g +++++f C + + ++++k+ Bradi1g06907.3.p 117 FYQGYGEKAGFKARTGSNRRSVGTGAMIMQRFLCCRGNYVNRKSKA 162 9**********************************99888887776 PP | |||||||
3 | FAR1 | 77.2 | 3.3e-24 | 423 | 509 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fY +YA ++GF+vrk s k+ n+ + +r +vCskeg+r ++ ++ +++++r+ rtgC+a++++k +++gk++vt+ + +HnH+l Bradi1g06907.3.p 423 EFYVSYAGSAGFNVRKGCSDKT-ANNVMRSRAYVCSKEGFRLKSVTA--EQKKPRPDARTGCQAHMTIKITTSGKYVVTEYVADHNHDLE 509 6*****************9999.6667****************9988..999************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.1E-4 | 117 | 167 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF03101 | 1.1E-21 | 423 | 509 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 2.3E-23 | 609 | 702 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.002 | 877 | 924 | IPR007527 | Zinc finger, SWIM-type |
Pfam | PF04434 | 3.1E-5 | 879 | 921 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 6.8E-6 | 899 | 926 | IPR006564 | Zinc finger, PMZ-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1155 aa Download sequence Send to blast |
MAGAAPPSGP PDPPPLEPEE PLSREYLSLR QAGEASEEEE EASRSPPPPA GAPGGERCRA 60 MMEVVKKDAV GVGGKWKVSK LVVDHNHELE VAPVEGGGAG VPVLGMEFDS ADDAKGFYQG 120 YGEKAGFKAR TGSNRRSVGT GAMIMQRFLC CRGNYVNRKS KAAKGLEEVE EGAAEKGKGE 180 VGPCKKRGRK PGKKNAQAPE VEMGGGIACT EIVQAVPSRR SSRRGRDEND VVRMAVENVI 240 EPEERNDEAV DGARNGSAGA NDEEEEDEME EEVGTKEKRG RGRPRKAVTE GNALQACDLG 300 ASASQCNNDD RKKILDKYLS KRQTRPVSGR PAKIVSRQAL AERRKRGVGG RFLASEGLPP 360 SRQLSERRSK RLEKQNLKEE EKPESKKDEI TEAEADPETE VVAGPGGEPK IGMVFVNEDK 420 AYEFYVSYAG SAGFNVRKGC SDKTANNVMR SRAYVCSKEG FRLKSVTAEQ KKPRPDARTG 480 CQAHMTIKIT TSGKYVVTEY VADHNHDLET PLVDIQILRS QKLLAKLQQP LDLPKVVLIP 540 NDYKNYIRTR STKDMPLGDA QAICEYLQRM KGKNPSFFYS IQVDEDDQIR NVFWSDIKSM 600 MDYNYFGDVL YVDTRYSTGH YGRPLLLFIG VNHHKQPTIF GTAFIYDESV ESFKWLFETF 660 KSAMSGKQPK TVLTDHSPTI SDAVASAWPG TTHRFSLLHL YQDATKILRD TFQGSETFAH 720 DFSRSLYNYE EEEDFLSNWE IITGKYNLKD NEWVSKFFEN RERWALPFGR DTFCADIEAT 780 LQCDNTEAIL ADILKAEIDL PYFFNSYNKF LEDKRLAERQ ADYLGVQMTQ RVAPLRLLWQ 840 AANTYTPALF EMFRLEYELI VACMIYSCGE IGSISEYEVT VKNRPRVHLV RFDSSEYKVI 900 CSCKKFEFVG ILCCHILKVL EIRNVKELPP HYILKRWRKD AQTEPPGFAA VDEDPKFSVS 960 KRYNSLCRTL YKIAAKAAEN TEAHTFMENQ YDQLLEQVEL ILQEKLHDKS SLSTIMKNHQ 1020 QNLIQNDASN SEPRRASAKK RKNVEMRRRQ QSPLESSKKQ KGRQDLLEPE ECEVPLRNEP 1080 STIPNDIPNH LTTPTNQFLS PSHIMQVPYV TQQFGLNSLQ GFPGISPFGQ VMIIFYCLKK 1140 EYYFCTLLSL LFCQ* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 277 | 285 | KRGRGRPRK |
2 | 1032 | 1041 | PRRASAKKRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g06907.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003558513.1 | 0.0 | protein FAR1-RELATED SEQUENCE 12 isoform X1 | ||||
TrEMBL | A0A0Q3GRA5 | 0.0 | A0A0Q3GRA5_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G06907.1 | 0.0 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 1e-106 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g06907.3.p |