PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g06460.1.p
Common NameBRADI_1g06460, LOC100827523
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family TCP
Protein Properties Length: 396aa    MW: 40761.1 Da    PI: 9.6143
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g06460.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP104.81.4e-3261173298
               TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt............ssssaseceaesssssa 82 
                        g+kdrhsk+ T++g RdRRvRl +++a++f+dLqd+LGfd++sk+++WLl +a +ai +l+ +            +            ++++
  Bradi1g06460.1.p  61 NGGKDRHSKVVTSKGVRDRRVRLAVPTAIQFYDLQDRLGFDQPSKAVDWLLDAASHAIAKLPPLdptafsfpfpadD-----------AQQAT 142
                       589*************************************************************5444444333330...........33333 PP

               TCP  83 snsssg................kaaksaaksk 98 
                       ++ +++                + ++s+   +
  Bradi1g06460.1.p 143 KKGKKPlllqqgsssttsesdlSLSRSD-AAR 173
                       3222224443332222222222111111.111 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.3E-3162178IPR005333Transcription factor, TCP
PROSITE profilePS5136930.7863121IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 396 aa     Download sequence    Send to blast
MCESEMEDGA SGEMAAAGGQ GAAAGGRRGG GGGGGGKRGR GERESGGATA SASRICRGRA  60
NGGKDRHSKV VTSKGVRDRR VRLAVPTAIQ FYDLQDRLGF DQPSKAVDWL LDAASHAIAK  120
LPPLDPTAFS FPFPADDAQQ ATKKGKKPLL LQQGSSSTTS ESDLSLSRSD AARDKQHKGA  180
VVTVAAAPGS AQAASSFTEL LSGNAIAAAE HIQSWYRQQQ RQLSAAGPVG FAAHPGNNNR  240
GASQDAACAG LRFGNAPPLG MAPARPLLPV RPVGFPTANS TGEIAPFSFV QGVLAAASAQ  300
APAPAGDYSL DFSMSSGFTG GGVGSNSRGT LQSNSRSQYF SNQLQLYELD GPSPPFLYDP  360
AAALAAHPSS ENRHLTGTPP LQLWNGFRME EKSQN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A2e-2168122155Putative transcription factor PCF6
5zkt_B2e-2168122155Putative transcription factor PCF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12432GGRRGGGGG
22736RGGGGGGGGK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g06460.1.p
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3582897e-63AK358289.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1072N07.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559357.30.0transcription factor PCF6
TrEMBLA0A0Q3GPA30.0A0A0Q3GPA3_BRADI; Uncharacterized protein
STRINGBRADI1G06460.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP30943271
Representative plantOGRP18015163
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.24e-32TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2