PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g04280.3.p | ||||||||
Common Name | BRADI_1g04280, LOC100843504 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | bHLH | ||||||||
Protein Properties | Length: 256aa MW: 26724.3 Da PI: 6.3744 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 35 | 2.6e-11 | 76 | 122 | 3 | 54 |
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 r+h e+E+rRR+ri+s +++Lr +l + +K +Ka+ L kAve +++L Bradi1g04280.3.p 76 RNHREAEKRRRERIKSHLDRLRAVLACD-----PKIDKASLLAKAVERVRDL 122 68************************98.....7*************99988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.865 | 73 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.96E-11 | 76 | 134 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.9E-9 | 76 | 122 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.3E-10 | 76 | 125 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.1E-7 | 79 | 128 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0009941 | Cellular Component | chloroplast envelope | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 256 aa Download sequence Send to blast |
MFPAAEAATF VVEAGVAAPR QGEAAAGLPP FFMGSMWPAA AAGGGGAGAA GSEEEDEAAV 60 AMAEAALHER AVAATRNHRE AEKRRRERIK SHLDRLRAVL ACDPKIDKAS LLAKAVERVR 120 DLKQRMAGIG AESAAATPQL FPTEHDEIVV LASSGGVFEA SVCCDDRSDL LPGLIDTLRA 180 LRLRTLRAEM ATLGGRVRNV LVLARDAGAE DDDGGGDFLK EALRALVERH GAAAGAGDRP 240 KRRRTVSDMN VQAAA* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 239 | 245 | PKRRRTV |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g04280.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ727966 | 1e-119 | KJ727966.1 Zea mays clone pUT6079 bHLH transcription factor (bHLH48) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003559255.1 | 1e-178 | transcription factor bHLH106 | ||||
Swissprot | O80674 | 3e-45 | BH106_ARATH; Transcription factor bHLH106 | ||||
TrEMBL | I1GLR7 | 1e-176 | I1GLR7_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G04280.1 | 1e-177 | (Brachypodium distachyon) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41130.1 | 6e-33 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g04280.3.p |
Entrez Gene | 100843504 |
Publications ? help Back to Top | |||
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