PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g04150.1.p | ||||||||
Common Name | BRADI_1g04150, LOC100823743 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | NAC | ||||||||
Protein Properties | Length: 326aa MW: 35855.3 Da PI: 7.2145 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 166.3 | 1.1e-51 | 18 | 143 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 lppGfrFhPtd+elv +yL++k++g +l++ +i+evd+yk++Pw Lp ++ ++kewyfF++rd+ky++g+r+nra+ +gyWkatg dk+v Bradi1g04150.1.p 18 LPPGFRFHPTDDELVEHYLCRKAAGGRLPV-PIIAEVDLYKFDPWALPDRALFGTKEWYFFTPRDRKYPNGSRPNRAAGNGYWKATGADKPVA 109 79****************************.88***************8777899*************************************9 PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyrl 128 +g++ g+kk Lvfy g+apkg+ktdW+mheyrl Bradi1g04150.1.p 110 P-HGRTLGIKKALVFYAGKAPKGVKTDWIMHEYRL 143 9.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.49E-64 | 14 | 172 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 59.567 | 18 | 172 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.2E-27 | 19 | 143 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 326 aa Download sequence Send to blast |
MAVRGTRRER DAEAELNLPP GFRFHPTDDE LVEHYLCRKA AGGRLPVPII AEVDLYKFDP 60 WALPDRALFG TKEWYFFTPR DRKYPNGSRP NRAAGNGYWK ATGADKPVAP HGRTLGIKKA 120 LVFYAGKAPK GVKTDWIMHE YRLADAGRAA AAGAKKGSLR LDDWVLCRLY NKKNEWEKMQ 180 MQQQLVGAKE ATKQESSDMV ITSHSNNNNN SQQSHSWGEA RTPESEIVDH DDPSSFPAAF 240 QSPAAQEMLA TMMVPKKEAA DDAGAGAGRN DLFVDLSYDD IQSMYSGLDM MPPGDDLLYS 300 TLFASPRVRG TNQAGAGVGG MPGPF* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 1e-108 | 5 | 178 | 2 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that possesses transactivation activity (PubMed:16924117, PubMed:20632034). Transcription activator involved in response to abiotic stresses. Plays a positive role during dehydration and salt stress. Binds specifically to the 5'-CATGTG-3' motif found in promoters of stress-responsive genes (PubMed:16924117). {ECO:0000269|PubMed:16924117, ECO:0000269|PubMed:20632034}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g04150.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by drought stresss, salt stress and cold stress (PubMed:16924117, PubMed:20632034). Induced by abscisic acid (ABA) (PubMed:16924117). Induced by methyl jasmonate (PubMed:20632034). {ECO:0000269|PubMed:16924117, ECO:0000269|PubMed:20632034}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ394702 | 1e-157 | DQ394702.1 Oryza sativa (japonica cultivar-group) stress-induced transcription factor NAC1 (snac1) mRNA, complete cds. | |||
GenBank | KM576135 | 1e-157 | KM576135.1 Oryza nivara stress-induced transcription factor NAC1 (SNAC1) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003563852.1 | 0.0 | NAC domain-containing protein 2 | ||||
Swissprot | Q75HE5 | 1e-154 | NAC2_ORYSJ; NAC domain-containing protein 2 | ||||
TrEMBL | I1GLQ0 | 0.0 | I1GLQ0_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G04150.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4414 | 30 | 71 | Representative plant | OGRP17 | 15 | 800 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08790.1 | 1e-77 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g04150.1.p |
Entrez Gene | 100823743 |
Publications ? help Back to Top | |||
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