PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g03810.1.p | ||||||||
Common Name | BRADI_1g03810 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 165aa MW: 17195.4 Da PI: 9.7526 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.2 | 0.0011 | 41 | 63 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+++F++ L H +H Bradi1g03810.1.p 41 FECKTCSRRFPSFQALGGHRASH 63 89**********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.03E-7 | 39 | 106 | No hit | No description |
Pfam | PF13912 | 9.4E-13 | 40 | 65 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.27 | 41 | 63 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.91 | 41 | 68 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 43 | 63 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.7E-8 | 84 | 108 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 7.8 | 84 | 106 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 86 | 106 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006979 | Biological Process | response to oxidative stress | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009631 | Biological Process | cold acclimation | ||||
GO:0009643 | Biological Process | photosynthetic acclimation | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0010224 | Biological Process | response to UV-B | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MKRLSFGQGP ADGAAVAQEV MLLLARVAGA ESAPAPVPRA FECKTCSRRF PSFQALGGHR 60 ASHKRPRGTQ TPTPASAPAR RRRHGCAVCG VEFALGQALG GHMRRHRAGA GAEEDEMGGR 120 GAVDEREREH GGESETRPGL LLGLDLNAAP SDGAGTPQLL SLWV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g03810.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024312546.1 | 1e-113 | zinc finger protein ZAT12-like | ||||
TrEMBL | I1GLK7 | 1e-112 | I1GLK7_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G03810.1 | 1e-112 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP501 | 37 | 157 | Representative plant | OGRP131 | 15 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59820.1 | 2e-18 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g03810.1.p |