PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g03770.2.p | ||||||||
Common Name | BRADI_1g03770 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | C2H2 | ||||||||
Protein Properties | Length: 196aa MW: 21629 Da PI: 11.2286 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.9 | 0.0015 | 155 | 177 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C F + L H+r+H Bradi1g03770.2.p 155 HECHVCRAGFETGQALGGHMRRH 177 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13912 | 4.3E-10 | 96 | 121 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.96 | 97 | 119 | IPR015880 | Zinc finger, C2H2-like |
SuperFamily | SSF57667 | 1.13E-6 | 97 | 119 | No hit | No description |
PROSITE profile | PS50157 | 10.138 | 97 | 124 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 99 | 119 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.13E-6 | 150 | 177 | No hit | No description |
SMART | SM00355 | 0.26 | 155 | 177 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.224 | 155 | 182 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.2E-10 | 155 | 180 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 157 | 177 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 196 aa Download sequence Send to blast |
MHTARDEPNN NFIHPRGLPA SLLFPYRPYF SQLILKLISR SISLPPFDQS KLALSSMKHQ 60 RDPSEMPLSL SLSLMAAERK IKKLRHRAGG AGESPAFVCK TCSRAFASFQ ALGGHRTSHL 120 RARNGLALSL AGSSPVRKST EQIKKPPQPQ QQQQHECHVC RAGFETGQAL GGHMRRHREE 180 AAAQLVPPVL LQLFV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g03770.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010227659.2 | 1e-140 | zinc finger protein ZAT12 | ||||
TrEMBL | A0A0Q3RGR6 | 1e-139 | A0A0Q3RGR6_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G03770.1 | 2e-95 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1305 | 30 | 117 | Representative plant | OGRP11904 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46080.1 | 1e-19 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g03770.2.p |