PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g03620.3.p
Common NameBRADI_1g03620
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRAS
Protein Properties Length: 621aa    MW: 68982.9 Da    PI: 6.1072
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g03620.3.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS474.3e-15287358273
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn 73 
                       ++lL++cA+a + +d ++  +lL+++++++s  gd+ qRla+yf+++L+arla+++s++y++l ++++++ +
  Bradi1g03620.3.p 287 TTLLIHCAQATAIDDYRNSVELLKQIRQHSSALGDAGQRLAHYFANGLEARLAGTGSTIYRSLVAQRNTTAD 358
                       689************************************************************988887544 PP
2GRAS237.46e-73358594104339
              GRAS 104 eavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                       + ++  e +Hi+D++i  G+QWp ++q +a R +gpp+lRiTg++ p++g   +e++e+tg+rL+++A++++vpfe+++ +a +++++++e+L
  Bradi1g03620.3.p 358 DILKAFELLHIVDYGIRWGFQWPIFMQRIARRLGGPPRLRITGIDLPQPGfrPAERVEATGQRLREYARTFKVPFEYHA-IAAKWDTVRVEDL 449
                       55677789*****************************************9*****************************.799********** PP

              GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvEr 287
                       +++++E l+Vn+ + + +++de+v+ +s+r +vL+++++++P+++++   +  +n++ F++rf eal y+s+lfd+le++ +r +e+r  +Er
  Bradi1g03620.3.p 450 KIDKDELLIVNCTFLMRHMMDETVTDDSPRMRVLNTIRKMNPHMFIHGVVNGTYNAPFFVTRFKEALFYFSSLFDMLETTSSRLDEHRLLIER 542
                       ********************************************************************************************* PP

              GRAS 288 ellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqakl 339
                        ++gre+ nvvaceg+er+er et+++W+ r  +aGF+++pl+++++k+a++
  Bradi1g03620.3.p 543 DFFGREALNVVACEGTERVERPETYKQWQVRNIRAGFRQLPLNQDTVKKARY 594
                       ************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.917260609IPR005202Transcription factor GRAS
PfamPF035142.1E-70358594IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 621 aa     Download sequence    Send to blast
MGSCEDVDYG DIFSVTNPAA APNYMFNFSP LQQQQQHPHL RFPAAPHGFH PGSVGPSPPS  60
GPPALGQTPS PSSSITTAEL DAPEDVTGDA VLAYINQFLL EDEDEDSCPG ASSAATDPQQ  120
DSALLAVEKP FVDIIADAAP AGACRQNNNP WMDPCCGFAG NDAGVFVGRQ TQTSSCQIVP  180
CEEEPVKLEG DCAVHKGRKN RHGDRGVELE EEEERRSKQS AVCEEETVRE MFDKVLLCDG  240
VNCILQSPLP AEAEVSAVYV KGSGNKRGRK KGKPGAAAAE EESVDLTTLL IHCAQATAID  300
DYRNSVELLK QIRQHSSALG DAGQRLAHYF ANGLEARLAG TGSTIYRSLV AQRNTTADIL  360
KAFELLHIVD YGIRWGFQWP IFMQRIARRL GGPPRLRITG IDLPQPGFRP AERVEATGQR  420
LREYARTFKV PFEYHAIAAK WDTVRVEDLK IDKDELLIVN CTFLMRHMMD ETVTDDSPRM  480
RVLNTIRKMN PHMFIHGVVN GTYNAPFFVT RFKEALFYFS SLFDMLETTS SRLDEHRLLI  540
ERDFFGREAL NVVACEGTER VERPETYKQW QVRNIRAGFR QLPLNQDTVK KARYKGISRC  600
DILAAGTTKR HIWISGVRQN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-352905868330GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g03620.3.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010227583.10.0scarecrow-like protein 9
SwissprotQ9XE581e-136SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A2K2DHX90.0A0A2K2DHX9_BRADI; Uncharacterized protein
STRINGBRADI1G03620.10.0(Brachypodium distachyon)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-135SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]