PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g03620.1.p
Common NameBRADI_1g03620, LOC104581531
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GRAS
Protein Properties Length: 660aa    MW: 73669.3 Da    PI: 6.2158
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g03620.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS362.84.9e-1112876572374
              GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                       ++lL++cA+a + +d ++  +lL+++++++s  gd+ qRla+yf+++L+arla+++s++y++l +++++   +++ l+a++l++ v+P+ k+s
  Bradi1g03620.1.p 287 TTLLIHCAQATAIDDYRNSVELLKQIRQHSSALGDAGQRLAHYFANGLEARLAGTGSTIYRSLVAQRNT---TADILKAFELYVTVCPFNKLS 376
                       689************************************************************999888...8******************** PP

              GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakr 185
                        +  N+aIl+a +  +r+Hi+D++i  G+QWp ++q +a R +gpp+lRiTg++ p++g   +e++e+tg+rL+++A++++vpfe+++ +a +
  Bradi1g03620.1.p 377 KFFSNEAILNASKDVTRLHIVDYGIRWGFQWPIFMQRIARRLGGPPRLRITGIDLPQPGfrPAERVEATGQRLREYARTFKVPFEYHA-IAAK 468
                       **********************************************************9*****************************.799* PP

              GRAS 186 ledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpre 278
                       ++++++e+L+++++E l+Vn+ + + +++de+v+ +s+r +vL+++++++P+++++   +  +n++ F++rf eal y+s+lfd+le++ +r 
  Bradi1g03620.1.p 469 WDTVRVEDLKIDKDELLIVNCTFLMRHMMDETVTDDSPRMRVLNTIRKMNPHMFIHGVVNGTYNAPFFVTRFKEALFYFSSLFDMLETTSSRL 561
                       ********************************************************************************************* PP

              GRAS 279 seerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvS 371
                       +e+r  +Er ++gre+ nvvaceg+er+er et+++W+ r  +aGF+++pl+++++k+a++ + k + + + v+e+++++++gWk++ +++ S
  Bradi1g03620.1.p 562 DEHRLLIERDFFGREALNVVACEGTERVERPETYKQWQVRNIRAGFRQLPLNQDTVKKARYKVTKSYHKDFLVDEDNKWMLQGWKGKVILAQS 654
                       *******************************************************************888*********************** PP

              GRAS 372 aWr 374
                        W+
  Bradi1g03620.1.p 655 TWK 657
                       **8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.169260637IPR005202Transcription factor GRAS
PfamPF035141.7E-108287657IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 660 aa     Download sequence    Send to blast
MGSCEDVDYG DIFSVTNPAA APNYMFNFSP LQQQQQHPHL RFPAAPHGFH PGSVGPSPPS  60
GPPALGQTPS PSSSITTAEL DAPEDVTGDA VLAYINQFLL EDEDEDSCPG ASSAATDPQQ  120
DSALLAVEKP FVDIIADAAP AGACRQNNNP WMDPCCGFAG NDAGVFVGRQ TQTSSCQIVP  180
CEEEPVKLEG DCAVHKGRKN RHGDRGVELE EEEERRSKQS AVCEEETVRE MFDKVLLCDG  240
VNCILQSPLP AEAEVSAVYV KGSGNKRGRK KGKPGAAAAE EESVDLTTLL IHCAQATAID  300
DYRNSVELLK QIRQHSSALG DAGQRLAHYF ANGLEARLAG TGSTIYRSLV AQRNTTADIL  360
KAFELYVTVC PFNKLSKFFS NEAILNASKD VTRLHIVDYG IRWGFQWPIF MQRIARRLGG  420
PPRLRITGID LPQPGFRPAE RVEATGQRLR EYARTFKVPF EYHAIAAKWD TVRVEDLKID  480
KDELLIVNCT FLMRHMMDET VTDDSPRMRV LNTIRKMNPH MFIHGVVNGT YNAPFFVTRF  540
KEALFYFSSL FDMLETTSSR LDEHRLLIER DFFGREALNV VACEGTERVE RPETYKQWQV  600
RNIRAGFRQL PLNQDTVKKA RYKVTKSYHK DFLVDEDNKW MLQGWKGKVI LAQSTWKPS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A7e-482906578375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g03620.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010227583.10.0scarecrow-like protein 9
SwissprotQ9XE581e-167SCL14_ARATH; Scarecrow-like protein 14
TrEMBLI1GLI50.0I1GLI5_BRADI; Uncharacterized protein
STRINGBRADI1G03620.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP138412529
Representative plantOGRP26615129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-166SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]