PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g03020.1.p
Common NameBRADI_1g03020, LOC100837762
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family GATA
Protein Properties Length: 147aa    MW: 16068.5 Da    PI: 10.5874
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g03020.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.91.4e-182660135
              GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                      C+ C+ttkTplWR gp g+k+LCnaCG++yrkk++
  Bradi1g03020.1.p 26 CTDCNTTKTPLWRGGPCGPKSLCNACGIRYRKKRR 60
                      ********************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577161.43E-131959No hitNo description
PROSITE profilePS5011412.8482056IPR000679Zinc finger, GATA-type
SMARTSM004012.9E-142072IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.107.4E-152460IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.90E-142560No hitNo description
PfamPF003202.0E-162660IPR000679Zinc finger, GATA-type
PROSITE patternPS0034402651IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MDSPVEKGSG SLDPDDRTAS GEPKACTDCN TTKTPLWRGG PCGPKSLCNA CGIRYRKKRR  60
EALGLDGPKR RETAACAHTA GEGAEQPPKK KTKREREEVT VELRMVGFGK AAVLKQRRRM  120
RRRRRLGEEE KAAILLMALS SGVIYA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115121QRRRMRR
2117122RRMRRR
3117124RRMRRRRR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00554DAPTransfer from AT5G49300Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g03020.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFP0928379e-88FP092837.1 Phyllostachys edulis cDNA clone: bphyst009f16, full insert sequence.
GenBankFP1012609e-88FP101260.1 Phyllostachys edulis cDNA clone: bphylf037m05, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003563322.11e-101GATA transcription factor 16
TrEMBLI1GLB31e-100I1GLB3_BRADI; Uncharacterized protein
STRINGBRADI1G03020.11e-101(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP24183892
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G49300.11e-25GATA transcription factor 16