PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g02410.1.p
Common NameBRADI_1g02410, LOC100843911
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family C2H2
Protein Properties Length: 401aa    MW: 42264.3 Da    PI: 7.5141
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g02410.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.46.5e-07144166123
                       EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                       ++C+ Cgk F+r  nL+ H+r H
  Bradi1g02410.1.p 144 HSCKLCGKGFKRDANLRMHMRAH 166
                       79*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.21E-5143167No hitNo description
SMARTSM003550.0016144166IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.926144166IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.5E-5144166IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035537198231IPR015880Zinc finger, C2H2-like
SMARTSM0035558236259IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MEAWDVRNGT GHGGGNGRGA EAEDGRSASA SAAALTTYLA FLEHKIGHLR GIICSPAPSL  60
PQQQQVVSAE LACIISQLAS IANDLATDAG TPSSPASSPS AGTPNAHAVD DEQQQEPVGS  120
SSSPPAYEVI ELDKEEILAP PHAHSCKLCG KGFKRDANLR MHMRAHGHSY NHKKEVNVSP  180
PPAPETKTKK RPAPAVCYSC PQAGCKRNRA HASFAPLKTA VCVRNHYRRT HCAKTHACRR  240
CGGVKRFAVL ADLRTHEKHC GRDRWVCSCT VSFSRRDKLL AHVALFPAGA GHSPALPLLP  300
DETAAAQCST GNNDTANGGG GRVTGSGELL PGTGTGGGDM MDQSFLSDIG MLDDFGCSDV  360
KGSIREDDGR RRGSLSPAGL DFCDFDGFDL FGTHAMNFDF *
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g02410.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559181.10.0zinc finger protein STAR3
TrEMBLI1GL410.0I1GL41_BRADI; Uncharacterized protein
STRINGBRADI1G02410.10.0(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151238111
Representative plantOGRP8301663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.32e-67C2H2 family protein