PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bradi1g02327.1.p | ||||||||
Common Name | BRADI_1g02327 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
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Family | WRKY | ||||||||
Protein Properties | Length: 337aa MW: 37281.4 Da PI: 8.2039 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 101.2 | 6.1e-32 | 119 | 175 | 3 | 60 |
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 DgynWrKYGqK+vkgsefprsYY+Ct+++Cpvk+kve++ d+++ ei+Y+geHnh+k Bradi1g02327.1.p 119 DGYNWRKYGQKQVKGSEFPRSYYKCTYPTCPVKRKVETTL-DGQIAEIVYNGEHNHPK 175 9***************************************.***************85 PP | |||||||
2 | WRKY | 88.2 | 7.1e-28 | 276 | 330 | 2 | 58 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 +D ++WrKYGqK v+g+ fprsYYrC++a+C+++k vers+ d + +++tYeg+Hnh Bradi1g02327.1.p 276 EDAFRWRKYGQKAVNGNLFPRSYYRCSTARCNARKFVERSS-D-NSLVTTYEGRHNH 330 7****************************************.4.567799******* PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50811 | 22.986 | 112 | 176 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 2.2E-27 | 113 | 176 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.57E-24 | 115 | 176 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.3E-34 | 117 | 175 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.9E-24 | 119 | 174 | IPR003657 | WRKY domain |
Gene3D | G3DSA:2.20.25.80 | 7.6E-26 | 264 | 330 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.96E-22 | 270 | 330 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 24.134 | 270 | 333 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.6E-29 | 275 | 332 | IPR003657 | WRKY domain |
Pfam | PF03106 | 7.8E-23 | 276 | 330 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 337 aa Download sequence Send to blast |
MQSQEKITAV KPVASRPFSS FSSFSKLLKD FTTTGSTPIT SPGETVIVRR PKATRFASPP 60 SDLTTGITAT TLQDGGSDTT HEQMVVDTEQ QAVSCDDHQT VFHNINKPIH SARNRLSYDG 120 YNWRKYGQKQ VKGSEFPRSY YKCTYPTCPV KRKVETTLDG QIAEIVYNGE HNHPKPHLSK 180 KPVSSTGTEV VIADLYGSND AGAESRLGGC NGLSLIGSNV VDDTFRRCCD CFDELGENSL 240 VCDCKGSRKE EQLNGLGAHV EAARVFQAST EYESSEDAFR WRKYGQKAVN GNLFPRSYYR 300 CSTARCNARK FVERSSDNSL VTTYEGRHNH IAERLG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 1e-19 | 119 | 330 | 8 | 77 | Probable WRKY transcription factor 4 |
2lex_A | 1e-19 | 119 | 330 | 8 | 77 | Probable WRKY transcription factor 4 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bradi1g02327.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK242855 | 2e-56 | AK242855.1 Oryza sativa Japonica Group cDNA, clone: J090073J20, full insert sequence. | |||
GenBank | AP014967 | 2e-56 | AP014967.1 Oryza sativa Japonica Group DNA, chromosome 11, cultivar: Nipponbare, complete sequence. | |||
GenBank | AP014968 | 2e-56 | AP014968.1 Oryza sativa Japonica Group DNA, chromosome 12, cultivar: Nipponbare, complete sequence. | |||
GenBank | AY341860 | 2e-56 | AY341860.1 Oryza sativa (japonica cultivar-group) WRKY20 mRNA, complete cds. | |||
GenBank | BX000496 | 2e-56 | BX000496.1 Oryza sativa chromosome 12, . BAC OSJNBa0096E03 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | BX000503 | 2e-56 | BX000503.2 Oryza sativa chromosome 12, . BAC OSJNBb0077A02 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | BX072548 | 2e-56 | BX072548.4 Oryza sativa chromosome 11, . BAC OSJNBa0029D01 of library OSJNBa from chromosome 11 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence. | |||
GenBank | CP012620 | 2e-56 | CP012620.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 12 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024312256.1 | 0.0 | WRKY transcription factor 44 isoform X2 | ||||
TrEMBL | I1GL34 | 0.0 | I1GL34_BRADI; Uncharacterized protein | ||||
STRING | BRADI1G02327.1 | 0.0 | (Brachypodium distachyon) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2325 | 29 | 41 | Representative plant | OGRP12627 | 3 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37260.2 | 4e-58 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Bradi1g02327.1.p |