PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g01058.2.p
Common NameBRADI_1g01058
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family WRKY
Protein Properties Length: 391aa    MW: 41504.3 Da    PI: 6.3885
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g01058.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY986.1e-31183241259
                       --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
              WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY+ eHnh+
  Bradi1g01058.2.p 183 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCMARKQVERSRSDPNMLVITYTAEHNHP 241
                       699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081133.247177243IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-30180243IPR003657WRKY domain
SuperFamilySSF1182901.83E-26181243IPR003657WRKY domain
SMARTSM007744.3E-38182242IPR003657WRKY domain
PfamPF031068.8E-26184241IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MDAMPTEIKD KDAQGDLADV VARASNATAA PASTTHRRHQ PLASAAAHHR SPADQYLAAT  60
DQQQQIMVST GIDDAAAMFE AAASTVVVDP YLSAAAVYGL QPHQHQQLMA VQISHQQSAQ  120
YVCCGAGDLV MGADDGAMRI SPPAAPQHNQ MIKRKSDVRK VVCIPAPPAT SSRGGAGGEV  180
IPSDLWAWRK YGQKPIKGSP YPRGYYRCSS SKGCMARKQV ERSRSDPNML VITYTAEHNH  240
PWPMHRNVLA GYARAPPHAV VAARNFTKQQ QGKIIDDNFA AISPSSSSSN SYNNFHLEAE  300
LQANNTMAVA AEGDGIGVGE EGGGGGEVMY ELAPCGSGGS GGQLLQADEV FAELEELEPA  360
DSSMMMISSA ANVYSRGVSS SSSNYEWHKF *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B4e-24155243279Disease resistance protein RRS1
5w3x_D4e-24155243279Disease resistance protein RRS1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g01058.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014752000.10.0probable WRKY transcription factor 14
TrEMBLA0A2K2DHK80.0A0A2K2DHK8_BRADI; Uncharacterized protein
STRINGMLOC_58349.14e-97(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134662832
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.16e-55WRKY DNA-binding protein 35