PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bradi1g00666.1.p
Common NameBRADI_1g00666, LOC100840669
Organism
Brachypodium distachyon
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Brachypodieae; Brachypodium
Family ERF
Protein Properties Length: 285aa    MW: 29700 Da    PI: 9.0544
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bradi1g00666.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.51.4e-17138187355
               AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       ++GVr ++ +g+++AeIrd + ng   r++lg+f+++e Aa a+++a+ +++g
  Bradi1g00666.1.p 138 FRGVRKRP-WGKFAAEIRDSTRNG--VRVWLGTFDSPEAAAMAYDQAAFAMRG 187
                       89******.**********44465..*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003809.8E-35137201IPR001471AP2/ERF domain
PROSITE profilePS5103222.55137195IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.6E-29137196IPR001471AP2/ERF domain
SuperFamilySSF541711.96E-21138196IPR016177DNA-binding domain
PRINTSPR003673.9E-9138149IPR001471AP2/ERF domain
CDDcd000182.76E-17138196No hitNo description
PfamPF008472.0E-12138187IPR001471AP2/ERF domain
PRINTSPR003673.9E-9161177IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0009873Biological Processethylene-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 285 aa     Download sequence    Send to blast
MSGHPRTTAT SSSSSSSSSS SPRLTTGVVN FLARRAMTAT ATQQRAAAAA FRVPLDSPGS  60
STGSADSAPW SSARAPANSH DLLLPFDTND ADEMLLLDML SSQAAAPMAE SPAPTTPAAP  120
AVKQEEEAAA GNGSGRAFRG VRKRPWGKFA AEIRDSTRNG VRVWLGTFDS PEAAAMAYDQ  180
AAFAMRGGAA VLNFPAEQVR RSLEGVAMDD GHGHGPVLAL KRRHSMRRRP AAAASGRKAA  240
MSKGPGRSQS QPEGVMELED LGAEYLEELL GASDSQSLWS HHSV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-251381971574Ethylene-responsive transcription factor ERF096
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00374DAPTransfer from AT3G23240Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBradi1g00666.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0699802e-59BT069980.1 Zea mays full-length cDNA clone ZM_BFb0349F03 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003559098.10.0ethylene-responsive transcription factor 1B
TrEMBLA0A0Q3GLJ90.0A0A0Q3GLJ9_BRADI; Uncharacterized protein
STRINGBRADI1G00670.11e-134(Brachypodium distachyon)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27737249
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.15e-31ethylene response factor 1