PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID evm_27.model.AmTr_v1.0_scaffold01267.1
Common NameAMTR_s01267p00006490, LOC18425515
Organism
Amborella trichopoda
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
Family MYB
Protein Properties Length: 234aa    MW: 27131.3 Da    PI: 6.1727
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
evm_27.model.AmTr_v1.0_scaffold01267.1genomeTAGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding46.11.1e-141057148
                                            TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                         Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                                            rg+W +eEd +l+  vk+ G ++W+ Ia+  g++R++k+c++rw +yl
  evm_27.model.AmTr_v1.0_scaffold01267.1 10 RGPWMEEEDIKLAMSVKLIGERRWDHIAQVSGLKRSGKSCRLRWMNYL 57
                                            89********************************************97 PP
2Myb_DNA-binding51.13.1e-1664108248
                                             SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
                         Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                                             gr+T++E+ l +++++q+G++ W++Iar+++ gRt++++k++w+++l
  evm_27.model.AmTr_v1.0_scaffold01267.1  64 GRMTAQEECLVLQLHAQWGNK-WSRIARRLP-GRTDNEIKNYWRTHL 108
                                             89*******************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.448557IPR017930Myb domain
SuperFamilySSF466892.36E-268104IPR009057Homeodomain-like
SMARTSM007177.1E-12959IPR001005SANT/Myb domain
PfamPF002492.1E-131057IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.608.0E-191164IPR009057Homeodomain-like
CDDcd001675.93E-81257No hitNo description
PROSITE profilePS5129423.82758112IPR017930Myb domain
SMARTSM007171.3E-1562110IPR001005SANT/Myb domain
PfamPF002494.8E-1464108IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-2365111IPR009057Homeodomain-like
CDDcd001675.84E-1165108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MGGEIEERRR GPWMEEEDIK LAMSVKLIGE RRWDHIAQVS GLKRSGKSCR LRWMNYLRPD  60
LKQGRMTAQE ECLVLQLHAQ WGNKWSRIAR RLPGRTDNEI KNYWRTHLRK EAQERCQATS  120
PSSFQDPTSL LLSHSKDKEP PNAHMKDFAP DNSLSGSSSP SSESVTTFDD YFLYADRSLP  180
CLQMDEKWIA DPHDEAEFWN SSHGPSDYYT DSLWNLEEED LKLEKCGANG RYF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A6e-23101124105MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Isoform MYB59-1 is induced by jasmonate (JA), salicylic acid (SA), gibberellic acid (GA), and ethylene. Also induced by cadmium (Cd). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:16531467}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006830119.11e-175transcription factor MYB48
SwissprotQ4JL843e-55MYB59_ARATH; Transcription factor MYB59
TrEMBLU5D0821e-173U5D082_AMBTC; Uncharacterized protein
STRINGERM975351e-174(Amborella trichopoda)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59780.33e-57myb domain protein 59
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Amborella Genome Project
    The Amborella genome and the evolution of flowering plants.
    Science, 2013. 342(6165): p. 1241089
    [PMID:24357323]
  3. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  4. Nishida S,Kakei Y,Shimada Y,Fujiwara T
    Genome-wide analysis of specific alterations in transcript structure and accumulation caused by nutrient deficiencies in Arabidopsis thaliana.
    Plant J., 2017. 91(4): p. 741-753
    [PMID:28586097]
  5. Hickman R, et al.
    Architecture and Dynamics of the Jasmonic Acid Gene Regulatory Network.
    Plant Cell, 2017. 29(9): p. 2086-2105
    [PMID:28827376]