PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | evm_27.model.AmTr_v1.0_scaffold00357.2 | ||||||||
Common Name | AMTR_s00357p00009370 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
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Family | TCP | ||||||||
Protein Properties | Length: 74aa MW: 8161.31 Da PI: 9.7888 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 72.2 | 1.6e-22 | 2 | 61 | 11 | 70 |
TCP 11 ihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssa 70 ++T++g+Rd R Rlsa++a++f+dLq +LG+ + sk ++WL++ a+ ai+el++ ++ ++ evm_27.model.AmTr_v1.0_scaffold00357.2 2 VCTAKGLRDQRFRLSAHTAIEFYDLQVSLGYNRSSKGVDWLITRANSAIDELAKPPTWQP 61 7***************************************************99855544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 20.807 | 1 | 53 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 3.5E-20 | 2 | 55 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
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Protein Sequence Length: 74 aa Download sequence Send to blast |
MVCTAKGLRD QRFRLSAHTA IEFYDLQVSL GYNRSSKGVD WLITRANSAI DELAKPPTWQ 60 PTTVKPPKPT TGE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 4e-15 | 2 | 53 | 3 | 54 | Putative transcription factor PCF6 |
5zkt_B | 4e-15 | 2 | 53 | 3 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor playing a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164) (PubMed:12931144, PubMed:17307931). Required during early steps of embryogenesis (PubMed:15634699). Participates in ovule develpment (PubMed:25378179). Activates LOX2 expression by binding to the 5'-GGACCA-3' motif found in its promoter (PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:15634699, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:18816164, ECO:0000269|PubMed:25378179}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by the miRNA miR-JAW/miR319 (PubMed:12931144, PubMed:18816164). {ECO:0000269|PubMed:12931144, ECO:0000269|PubMed:18816164}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004510040.1 | 3e-24 | transcription factor TCP4-like | ||||
Swissprot | Q8LPR5 | 9e-22 | TCP4_ARATH; Transcription factor TCP4 | ||||
TrEMBL | W1NTM0 | 8e-48 | W1NTM0_AMBTC; Uncharacterized protein | ||||
STRING | ERM98545 | 1e-48 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP180 | 15 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 3e-22 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | evm_27.model.AmTr_v1.0_scaffold00357.2 |