PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | evm_27.model.AmTr_v1.0_scaffold00224.2 | ||||||||
Common Name | AMTR_s00224p00009210, LOC18429885 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; basal Magnoliophyta; Amborellales; Amborellaceae; Amborella
|
||||||||
Family | TCP | ||||||||
Protein Properties | Length: 157aa MW: 17448 Da PI: 10.3659 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 58.9 | 2.1e-18 | 48 | 135 | 20 | 85 |
TCP 20 RRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt......................sss 68 R Rlsa++a++f+dLq +LG+ + sk ++WL++ ak ai+el+++ evm_27.model.AmTr_v1.0_scaffold00224.2 48 QRFRLSAHTAIKFYDLQVSLGYNRFSKGVDWLITRAKSAIDELAELptwqpttvkppkpttgtsltktR-- 116 599*******************************************66555544433332222222110.. PP TCP 69 sa.sec.eaesssssasns 85 ++ s++ ++ +++ s+s+s evm_27.model.AmTr_v1.0_scaffold00224.2 117 ASlSSSlKPITQNLSHSHS 135 1111111222222222222 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51369 | 12.631 | 30 | 90 | IPR017887 | Transcription factor TCP subgroup |
Pfam | PF03634 | 1.2E-15 | 49 | 132 | IPR005333 | Transcription factor, TCP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 157 aa Download sequence Send to blast |
MENIFVHLNL MNNFSVSPEL WKMFGGIKLQ KSRPESQHCS ISSVWFAQRF RLSAHTAIKF 60 YDLQVSLGYN RFSKGVDWLI TRAKSAIDEL AELPTWQPTT VKPPKPTTGT SLTKTRASLS 120 SSLKPITQNL SHSHSSIAAQ SNPPSSFLLP PMETES* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011626273.1 | 8e-42 | transcription factor TCP4 | ||||
TrEMBL | W1P2I2 | 1e-110 | W1P2I2_AMBTC; Uncharacterized protein | ||||
STRING | ERN01781 | 1e-111 | (Amborella trichopoda) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Representative plant | OGRP180 | 15 | 163 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G15030.3 | 4e-17 | TCP family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | evm_27.model.AmTr_v1.0_scaffold00224.2 |
Entrez Gene | 18429885 |
Publications ? help Back to Top | |||
---|---|---|---|
|